TCONS_00054872-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054872-protein
Unique NameTCONS_00054872-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length196

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054872-protein ID=TCONS_00054872-protein|Name=TCONS_00054872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MAXKQNSKGLNDYFNHSRNLVTLKSMEKKTSLVKNKKLSVVALLTELPAT
RHLLESLILDVCLVTNECLVFNLKGIFLEGKDLTPRGFTRSFVGVPESGA
KFLLINDHLTVRQATDKEIASLENGITQSSSTGAAVSPNLSAEQQEMLQR
FSQQSGMKPKYSLDCLSSSNWDFQAAAAKFNELKQGGKLPPDAFGV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034570XLOC_034570Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054872TCONS_00054872Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005637TAP_C_dom
IPR018222Nuclear_transport_factor_2_euk
IPR009060UBA-like
IPR032710NTF2-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0051028mRNA transport
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051028 mRNA transport
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005637TAP C-terminal (TAP-C) domainSMARTSM00804TAP_C_clscoord: 133..196
e-value: 2.7E-23
score: 93.4
IPR005637TAP C-terminal (TAP-C) domainPFAMPF03943TAP_Ccoord: 146..194
e-value: 1.1E-20
score: 72.9
IPR005637TAP C-terminal (TAP-C) domainPROSITEPS51281TAP_Ccoord: 142..196
score: 22.618
IPR005637TAP C-terminal (TAP-C) domainCDDcd14342UBA_TAP-Ccoord: 144..194
e-value: 3.3944E-22
score: 84.9386
NoneNo IPR availableGENE3D3.10.450.50coord: 1..124
e-value: 3.8E-28
score: 97.9
NoneNo IPR availableGENE3D1.10.8.10coord: 141..194
e-value: 1.8E-23
score: 81.4
IPR018222Nuclear transport factor 2, eukaryotePROSITEPS50177NTF2_DOMAINcoord: 1..111
score: 10.21
IPR009060UBA-likeSUPERFAMILY46934UBA-likecoord: 135..194
IPR032710NTF2-like domainSUPERFAMILY54427NTF2-likecoord: 5..122

Blast
[Close]
BLAST of TCONS_00054872-protein vs. Swiss-Prot (Human)
Match: NXF1 (Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.064e-37
Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 0 
Query:   10 LNDYFNHSRNLVTLKSMEKKTSLVKNKKLSVVALLTELPATRHLLESLILDVCLVTNECLVFNLKGIF--LEGKDLTP-RGFTRSFVGVPESGAKFLLINDHLTVRQATDKEI--ASLENGITQSSSTGAAVSPNLSAEQQEMLQRFSQQSGMKPKYSLDCLSSSNWDFQAAAAKFNELKQGGKLPPDAF 194
            L +YF  SRN+  LK    +  L+K+ +L+VVA L ELP T+H + S ++D+   T+  L F++ G+F  ++GK     R FTR+F+ VP S +   ++ND L VR A+ +EI  A      T SSS      P LS EQQEMLQ FS QSGM  ++S  CL  +NWD+  +A  F  LK  G++P  AF
Sbjct:  432 LAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP----VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617
The following BLAST results are available for this feature:
BLAST of TCONS_00054872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NXF11.064e-3742.11Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF... [more]
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