TCONS_00054897-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054897-protein
Unique NameTCONS_00054897-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054897-protein ID=TCONS_00054897-protein|Name=TCONS_00054897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MTNPHGKRRGTRYLFSKGYKKNGVEHLSTYLKVYKVGDIVDVKGNGAFQK
GMPYKFYHGKTGRVFNVTRRAVGVVVNKQLGNRIIPKRINVRIEHVRHST
CRDDFLNRVKANEVKKAEANAKGEKVDCRRLPVQPREGHFVTTKRNEPTL
VEPIPYEFII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034593XLOC_034593Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054897TCONS_00054897Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001147Ribosomal_L21e
IPR018259Ribosomal_L21e_CS
IPR008991Translation_prot_SH3-like
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001147Ribosomal protein L21eGENE3D2.30.30.70coord: 1..99
e-value: 3.0E-47
score: 158.2
IPR001147Ribosomal protein L21ePFAMPF01157Ribosomal_L21ecoord: 5..99
e-value: 4.6E-43
score: 145.0
IPR018259Ribosomal protein L21e, conserved sitePROSITEPS01171RIBOSOMAL_L21Ecoord: 37..62
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 3..99

Blast
[Close]
BLAST of TCONS_00054897-protein vs. Swiss-Prot (Human)
Match: RL21 (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.350e-70
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 0 
Query:    1 MTNPHGKRRGTRYLFSKGYKKNGVEHLSTYLKVYKVGDIVDVKGNGAFQKGMPYKFYHGKTGRVFNVTRRAVGVVVNKQLGNRIIPKRINVRIEHVRHSTCRDDFLNRVKANEVKKAEANAKGEKVDCRRLPVQPREGHFVTTKRNEPTLVEPIPYEFI 159
            MTN  GKRRGTRY+FS+ ++K+GV  L+TY+++YK GDIVD+KG G  QKGMP+K YHGKTGRV+NVT+ AVG+VVNKQ+  +I+ KRINVRIEH++HS  RD FL RVK N+ KK EA  KG  V  +R P  PRE HFV T   EP L+EPIPYEF+
Sbjct:    1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159
The following BLAST results are available for this feature:
BLAST of TCONS_00054897-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL211.350e-7062.8960S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
back to top