TCONS_00055036-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055036-protein
Unique Name	TCONS_00055036-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	933

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055036-protein ID=TCONS_00055036-protein|Name=TCONS_00055036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=933bp
MEIFYLVACLIFYFTRSVNGSFLDFAPPYLANDALNGEREYANISGDIKL
GALVAIYDAGGQVNRQCKTEGISPFGIQRVEAMKFAVNEINAKGIIPNVT
LGIEIRDSCGTETHALDEALHFVTDRVPTCIEDQRVPIFGVVGASMSLLT
AAVANLLRLFQIPLVSYAATSTELSNKEKYDFLLRTVPPDNLQSAAMVDF
IIDVLGWKSVFIIYSAGSYGEYGFESFMEAVDQRANDTKDSLCIVDKEKV
KPGISEKEMLAILDEFNKGFKSVVGIVCYCEIPDVTTLVKVIDKHYPRFR
LIGSDTTLSGAKTNKSIIFSLAYDSNSVSDFYKIYRGLTPKKVNVSSNPW
FHQFWNESCAKLKAMNPGYNDTDCSSEDVFGFCRDTPIETNDVTCPQDDK
IPYTIDAIYAYAYAIRNLLESKPDKNVTRLLSMNLKNRVFFDEYLKKVEF
DGRSGSISFGEDVERGAYDIIQFIGEKRSVLGMWKEGSIYVNQSIQETLR
REFDESTCQPKCKNNEEQVEKYKTRCCWTCEACADDEYLRNNTCFACDHG
QQPNKDGDGCVDTPIEYIKPYWQGIIGVLSTIGIICTLFTFKVFIKNNDT
PLVKASGRELTYLLLLGILMLFCNPLFMIPEPSDITCGISRFNFGIFLCL
CYGSLLVKTNRIARIFTGKQDLLFLTPNWQLILTAFIMMPQVLITSIGLV
KDRTLSYINYDIDPRVGYHMCSKASDTGDIYGTIVYNILLVIMCTYYAFL
TRKVPANFNESRYIGFVMYTTIVIWCAFLPVYFWISLEQRLVFLMLDHIL
NALTLLIGLFGMKMYILLLKPDKNTMANSKTRSVTYVSELDTNGTVYIDG
LSNGVAMSHGRYKAISTSTLGGPNTPTTAHHQNNNSEDRKTKEFYIENEI
QTEDRGTSTSAEPVQEEKIGNGFHAALHKTFTM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034667	XLOC_034667	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055036	TCONS_00055036	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR001828	ANF_lig-bd_rcpt
IPR017978	GPCR_3_C
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 210..227 score: 44.27 coord: 736..759 score: 57.03 coord: 645..666 score: 50.99 coord: 759..780 score: 53.27 coord: 141..167 score: 52.43 coord: 174..193 score: 50.62 coord: 45..57 score: 40.38 coord: 600..622 score: 56.79 coord: 90..109 score: 41.09
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 79..475 e-value: 5.4E-53 score: 180.2
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 584..816 e-value: 1.0E-49 score: 169.4
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 572..833 score: 45.697
None	No IPR available	GENE3D	3.40.50.2300		coord: 36..464 e-value: 2.0E-56 score: 190.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 868..891
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 45..486

Blast

[Close]

BLAST of TCONS_00055036-protein vs. Swiss-Prot (Human)
Match: GRM3 (Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2)

HSP 1 Score: 398.667 bits (1023), Expect = 1.202e-124
Identity = 281/878 (32.00%), Postives = 437/878 (49.77%), Query Frame = 0

Query:   39 REYANISGDIKLGALVAIYDAG------GQVNRQCKTEGISPFGIQRVEAMKFAVNEINAKG-IIPNVTLGIEIRDSCGTETHALDEALHFVTDRVPTCIE------------DQRVPIF--GVVGASMSLLTAAVANLLRLFQIPLVSYAATSTELSNKEKYDFLLRTVPPDNLQSAAMVDFIIDVLGWKSVFIIYSAGSYGEYGFESFMEAVDQRANDTKDSLCIVDKEKVKPGISEKEMLAILDEFNKGFKSVVGIVCYCEIPDVTTLVKVIDKHYPRFRLIGSD------TTLSGAKTNKSIIFSLAYDSNSVSDFYKIYRGLTPKKVNVSSNPWFHQFWNESCAKLKAMNPGYNDTDCSSEDVFGFCR--DTPIETNDVTCPQDDKIPYTIDAIYAYAYAIRNLLESKPDKNVTRLLSMN--LKNRVFFDEYLKKVEF------DGRSGSI----SFGEDVERGAYDIIQF--IGEKRSVL--GMWKEG-SIYVNQSIQETLRREFDESTCQPKCKNNEEQVEKYKTRCCWTCEACADDEYLRNN-TCFACDHGQQPNKDGDGCVDTPIEYIKPYWQGIIGV----LSTIGIICTLFTFKVFIKNNDTPLVKASGRELTYLLLLGILMLFCNPLFMIPEPSDITCGISRFNFGIFLCLCYGSLLVKTNRIARIF----TGKQDLLFLTPNWQLILTAFIMMPQVLITSIGLVKDRTLSYINYDIDPRVGYHMCSKASDTGDIYGTIVYNILLVIMCTYYAFLTRKVPANFNESRYIGFVMYTTIVIWCAFLPVYFWISLEQRL--VFLMLDHILNALTLLIGLFGMKMYILLLKPDKNTMA-----NSKTRSVTYVSELDTNGTVYIDGLSNG 854
            R    I GD+ LG L  I + G      G++N           GIQR+EAM FA++EIN    ++P V LG+ I D+C  +T+AL+++L FV   +    E             + +P+   GV+G S S ++  VANLLRLFQIP +SYA+TS +LS+K +YD+  RTVPPD  Q+ AM + I+    W  V  + S G YGE G E+F +    R      ++CI   EKV      K   +++ E  +   + V +V +    D   L+    +    F  + SD      + + G++       +L   S  V  F + ++ L P   N   NPWF  FW +                CS ++     R  D  +  +     Q+ KI + ++A+YA A+A+  + +     N T+L      L  +  + +YL K+ F      +  + SI    +FG+ +  G Y++  F  +G K S L  G W E  S+ VN SI  + R     S C   C  NE +  +    CCW C  C   EYL +  TC  C  GQ P  D  GC D P +YI+  W+    +    ++ +G +CT     VFIK+N+TPLVKASGREL Y+LL G+ + +C   F I +PS + C + R   G    +CY +LL KTN IARIF     G Q   F++P+ Q+ +   +++ Q+++ S+ L+ +   +      + R    +     D+  +  ++ Y+++LVI+CT YAF TRK P NFNE+++IGF MYTT +IW AFLP+++  S + R+    + +   L+   +L  LF  K++I+L +P KN +      N  + S T  +   ++ + Y+  + NG
Sbjct:   30 RREIKIEGDLVLGGLFPINEKGTGTEECGRINED--------RGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAE-ILRFFNWTYVSTVASEGDYGETGIEAFEQEARLR------NICIATAEKVGRSNIRKSYDSVIRELLQKPNARV-VVLFMRSDDSRELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNP--YNNHRNPWFRDFWEQK-------------FQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKM-QRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM--GRYNVFNFQNVGGKYSYLKVGHWAETLSLDVN-SIHWS-RNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYLADEFTCMDCGSGQWPTADLTGCYDLPEDYIR--WEDAWAIGPVTIACLGFMCTCMVVTVFIKHNNTPLVKASGRELCYILLFGVGLSYCMTFFFIAKPSPVICALRRLGLGSSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVSVWLILEAPGTRRYTLAEKRETVILKCNVKDSSMLI-SLTYDVILVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIILFQPQKNVVTHRLHLNRFSVSGTGTTYSQSSASTYVPTVCNG 868

The following BLAST results are available for this feature:

BLAST of TCONS_00055036-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055036-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM3	1.202e-124	32.00	Metabotropic glutamate receptor 3 OS=Homo sapiens ...	[more]

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TCONS_00055036-protein (polypeptide) - C. hemisphaerica