TCONS_00055182-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055182-protein
Unique NameTCONS_00055182-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055182-protein ID=TCONS_00055182-protein|Name=TCONS_00055182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MAVRARYENSNEIGVYSKLTNTYCMVGVGASQNFYSVFEGELDDVIPVFQ
ASVSDSAIVGRLTAGNRHGLLVPSTTTDQELQHIRNSLPDGVKLQRVEER
LSALGNVVACNDYVALVHPDLDRETEEILADTLKVEVFRQTIAENSLVGT
YCSISNQGGLVHPKTSIENQDEISSLLQIPLVAGTVNRGSEVIGAGMIVN
DWCSFCGLDTTSTELSVIESIFKLGDAQQSAITTTMRAALIESMT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034756XLOC_034756Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055182TCONS_00055182Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002769eIF6
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042256 mature ribosome assembly
molecular_function GO:0043022 ribosome binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002769Translation initiation factor IF6SMARTSM00654eIF6neu2coord: 3..204
e-value: 6.8E-127
score: 437.5
IPR002769Translation initiation factor IF6PIRSFPIRSF006413Transl_init_IF-6coord: 1..226
e-value: 1.8E-93
score: 309.9
IPR002769Translation initiation factor IF6TIGRFAMTIGR00323TIGR00323coord: 4..224
e-value: 1.9E-80
score: 267.2
IPR002769Translation initiation factor IF6PFAMPF01912eIF-6coord: 4..203
e-value: 4.7E-79
score: 264.3
IPR002769Translation initiation factor IF6HAMAPMF_00032eIF_6coord: 1..245
score: 128.309
IPR002769Translation initiation factor IF6CDDcd00527IF6coord: 2..223
e-value: 1.04084E-118
score: 340.031
NoneNo IPR availableGENE3D3.75.10.10coord: 1..224
e-value: 8.4E-114
score: 377.8
NoneNo IPR availableSUPERFAMILY55909Penteincoord: 1..224

Blast
[Close]
BLAST of TCONS_00055182-protein vs. Swiss-Prot (Human)
Match: IF6 (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 4.745e-144
Identity = 186/245 (75.92%), Postives = 216/245 (88.16%), Query Frame = 0 
Query:    1 MAVRARYENSNEIGVYSKLTNTYCMVGVGASQNFYSVFEGELDDVIPVFQASVSDSAIVGRLTAGNRHGLLVPSTTTDQELQHIRNSLPDGVKLQRVEERLSALGNVVACNDYVALVHPDLDRETEEILADTLKVEVFRQTIAENSLVGTYCSISNQGGLVHPKTSIENQDEISSLLQIPLVAGTVNRGSEVIGAGMIVNDWCSFCGLDTTSTELSVIESIFKLGDAQQSAITTTMRAALIESMT 245
            MAVRA +EN+ EIG ++KLTNTYC+V +G S+NFYSVFEGEL D IPV  AS++   I+GR+  GNRHGLLVP+ TTDQELQHIRNSLPD V+++RVEERLSALGNV  CNDYVALVHPDLDRETEEILAD LKVEVFRQT+A+  LVG+YC  SNQGGLVHPKTSIE+QDE+SSLLQ+PLVAGTVNRGSEVI AGM+VNDWC+FCGLDTTSTELSV+ES+FKL +AQ S I T+MR +LI+S+T
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 245
The following BLAST results are available for this feature:
BLAST of TCONS_00055182-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF64.745e-14475.92Eukaryotic translation initiation factor 6 OS=Homo... [more]
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