TCONS_00055187-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055187-protein
Unique NameTCONS_00055187-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055187-protein ID=TCONS_00055187-protein|Name=TCONS_00055187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MSGTPYIGSKISLVSKAKIRYEGYLYTIDQNESTVTLAKVKSMGTEDRCP
NEPVPAREEIFEYIVFRGHDIEDLHVSEAPKKPQPKQMSDPAIAHSGPIQ
QTQNFSNPPNQYQNFNQFGGMPNLVYPQYPPSRQPDPSMNRQTPPNLPRT
PTPEPLKQSTGEERSSNQGRSRTDSNRSSDRKNSVDNKSKNNDHRDNRHD
NRNRYNNRDNRRDNNSQNYRDNRDPERRDNRRDNTRYNRDNRDNRDNREN
RENRESRENRDNRDNRSNDQSRDKNNYNDRRRGSGSRGRGTRGGAGGNKN
TTRGTREKFTEDFNFEESNAKFNKEEIEKELLKVLNKVKIEDDDEVEDKV
EEKEVNDNAPLPSPDKFYDRSKSFFDNISCEAMGPKPAAPPQPKPEEGVM
TRRQERALNVETFGSQAGYYRRGGYRGRGGYRGRGRGRGRGGNNFRGRGN
YRGNSNRNWVDYDFDYEAAGIKSRNPAPKTATTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034760XLOC_034760Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055187TCONS_00055187Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR019050FDF_dom
IPR025761FFD_box
IPR025762DFDF
IPR025768TFG_box
IPR010920LSM_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 1..98
e-value: 2.3E-47
score: 173.4
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 5..78
e-value: 6.1E-29
score: 99.8
IPR025609Lsm14-like, N-terminalCDDcd01736LSm14_Ncoord: 3..76
e-value: 4.69777E-34
score: 121.926
IPR019050FDF domainSMARTSM01199FDF_2coord: 307..417
e-value: 1.5E-24
score: 97.6
IPR019050FDF domainPFAMPF09532FDFcoord: 308..415
e-value: 2.2E-14
score: 54.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..310
IPR025761FFD boxPROSITEPS51513FFDcoord: 366..382
score: 15.914
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 301..337
score: 12.359
IPR025768TFG boxPROSITEPS51536TFGcoord: 397..417
score: 11.166
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..81

Blast
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BLAST of TCONS_00055187-protein vs. Swiss-Prot (Human)
Match: LS14A (Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 1.732e-34
Identity = 73/130 (56.15%), Postives = 87/130 (66.92%), Query Frame = 0 
Query:    3 GTPYIGSKISLVSKAKIRYEGYLYTIDQNESTVTLAKVKSMGTEDRCPNEPVPAREEIFEYIVFRGHDIEDLHVSEAPKKPQPKQMSDPAIAHSGPIQQTQNFSNPPNQYQNFNQFGGMPNLVYPQYPPS 132
            GTPYIGSKISL+SKA+IRYEG LYTID   STV LAKV+S GTEDR  + P+P R+E+FEYI+FRG DI+DL V E P KPQ     DPAI  S     T +F +      ++  FG MP   Y Q+ PS
Sbjct:    4 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCE-PPKPQCSLPQDPAIVQSSLGSSTSSFQS----MGSYGPFGRMPT--YSQFSPS 126
The following BLAST results are available for this feature:
BLAST of TCONS_00055187-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LS14A1.732e-3456.15Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A ... [more]
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