TCONS_00055197-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055197-protein
Unique Name	TCONS_00055197-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	200

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055197-protein ID=TCONS_00055197-protein|Name=TCONS_00055197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKVSLSPRAYSKVLLHACKYPHKAVNGVLLAEECKHTSDLLRIVDTIPLF
HQCLGLAPMLEIALNQIDSYCRSNQLVIAGYYQGNENYNDNDPDFIAYKI
GEKLVENSQNSILMMIDNQKMDVDCKETALKLYQMQDNKWKENPTWHLVG
GETALACSSDLMRSKTYQSLVDFDNHLDDITSDWLNPHLNKVIELTSTGE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034767	XLOC_034767	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055197	TCONS_00055197	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005366	EMC8/9

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005366	ER membrane protein complex subunit 8/9	PFAM	PF03665	UPF0172	coord: 3..189 e-value: 1.5E-63 score: 214.2
IPR005366	ER membrane protein complex subunit 8/9	CDD	cd08060	MPN_UPF0172	coord: 5..186 e-value: 2.15485E-81 score: 241.815

Blast

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BLAST of TCONS_00055197-protein vs. Swiss-Prot (Human)
Match: EMC8 (ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.799e-55
Identity = 87/203 (42.86%), Postives = 125/203 (61.58%), Query Frame = 0

Query:    3 VSLSPRAYSKVLLHACKYPHKAVNGVLLAEECKHTSDLLRI----------VDTIPLFHQCLGLAPMLEIALNQIDSYCRSNQLVIAGYYQGNENYNDNDPDFIAYKIGEKLVENSQNSILMMIDNQKMDVDCKETALKLYQMQDNKWKENPTWH--LVGGETALACSSDLMRSKTYQSLVDFDNHLDDITSDWLNPHLNKVI 193
            V L+ +AY K++LH  KYPH AVNG+L+AE+ K   + L +          VD IPLFH  L LAPMLE+AL  IDS+C+ +  VIAGYYQ NE   D  P+ +A K+  ++ E   ++ L+M+DN K  +DC    + +Y+  +N+W+     H        A   S+ L+ S++Y++LVDFDNHLDDI +DW NP +NK +
Sbjct:    4 VKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEINKAV 206

The following BLAST results are available for this feature:

BLAST of TCONS_00055197-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055197-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EMC8	6.799e-55	42.86	ER membrane protein complex subunit 8 OS=Homo sapi...	[more]

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TCONS_00055197-protein (polypeptide) - C. hemisphaerica