TCONS_00055327-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055327-protein
Unique Name	TCONS_00055327-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	733

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055327-protein ID=TCONS_00055327-protein|Name=TCONS_00055327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp
MADNTHMTKEVSNLFDELFSEDYESLKNVDQVFIDYQKQETSLKTAIEES
EVKTEGDLNNLSETCTSTLQELESISEQITSLLTQYQTHIDTVTKPKDEL
ESKVIQNEQLEQEICYKLWVDKIQSQSSAVKKSINSSDIKNAVDQHYILY
QICAALQSSACGNLRNFSYDVCEKLYQELRASIESKLSVLLTTMKFPFAN
GVSAPVFNQKEETEEQFKNLLTIAVKLQSLSIDSKYSLVTLLLTDPFKKR
FHFHFYGDRHTNNVEKPEWFLTQILNWKRDHMQFIEGYINPLLKECTKDE
EFSLKDEFLEILLDLCEEKLRKTLKQCLDDDVLLAHLIDETMVFDKELQL
LTPGQPEMNCIKVLLEEENLKHWIDLEKKLAMEVITDLIEKPNNWQPKFS
DVVVIEKKLSFYVPKCVEEFVTMVSMMMNRYENISERSSQKLFMVVLNDT
INSFVLEMKQKASVEHIRPESQAYCSIMNGAFYLHHILTEWSSDIRFLSI
LIDGDTKDSNESDNEAEEEEDIARPFDTEIQTLEKFLDELIDWLIKYMTD
GLKNKLKPYKAESWHSLPRIKDYVIPTLSSGACSLMLFIKEHLHSLEEKC
YHDVFDKIWREFCYSIDELLFTEIVCECHFNEGGASQLQFDIKKNLYVLF
GQYTLRVENYFKRLRESCILLNLLAGSALLIKERLKVSTAENSDEIQDIL
EEHDIHVLSFEHVNRIIHSRVDWPKQQLNYKIK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034857	XLOC_034857	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055327	TCONS_00055327	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007528	RINT1_Tip20

Vocabulary: **Biological Process**
Term	Definition
GO:0048193	Golgi vesicle transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
cellular_component	GO:0005783	endoplasmic reticulum

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..78
IPR007528	RINT-1/Tip20	PFAM	PF04437	RINT1_TIP1	coord: 242..719 e-value: 2.6E-84 score: 283.8
IPR007528	RINT-1/Tip20	PROSITE	PS51386	RINT1_TIP20	coord: 155..733 score: 69.874

Blast

[Close]

BLAST of TCONS_00055327-protein vs. Swiss-Prot (Human)
Match: RINT1 (RAD50-interacting protein 1 OS=Homo sapiens GN=RINT1 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 4.576e-89
Identity = 199/688 (28.92%), Postives = 350/688 (50.87%), Query Frame = 0

Query:   70 QELESISEQITSLLTQYQTHIDTVTKPKDELESKVIQNEQLEQEICYKLWVDKIQSQSSAVKKSINSSDIKNAVDQHYILYQICAALQSSACGNLRNFSYDVCEKLYQELRASIESKLSVLLTTMKFPFAN-------GVSAPVFNQKEETEEQFKNLLTIAVKLQSL--------SIDSKYSL---------VTLLLTDPFKKRFHFHFYGDRHTNNVEKPEWFLTQILNWKRDHMQFIEGYINPLLKECTKDEEFSLKDEFLEILLDLCEEKLRKTLKQCLDDDVLLAHLIDETMVFDKELQLLTPGQPE--MNCIKVLLEEENLKHWIDLEKKLAMEVITDLIEKPNNWQPKFSDVVVIEKKLSFYVPKCVEEFVTMVSMMMNRYENISERSSQKLFMVVLNDTINSFVLEMKQKASVEHIRPESQAYCSIMNGAFYLHHILTEWSSDIRFLS-------ILIDGDTKDSNESDNEAEEEEDIARPFDTEIQTLEKFLDELIDWLIKYMTDGLKNKLKPYKAESWHSLPRIKDYVIPTLSSGACSLMLFIKEHLHSLEEKCYHDVFDKIWREFCYSIDELLFTEIVCECHFNEGGASQLQFDIKKNLYVLFGQYTLRVENYFKRLRESCILLNLLAGSALLIKERLKVSTAENSDEIQDILEEHDIHVLSFEHVNRIIHSRVDWP 724
            Q L    EQ T L +   +H+ T     D+L + + Q E++E+ + Y  W+ +I+  S  +++ + ++++  A      + ++   LQ S+C +L  F     +  ++ L+  + S    +L  + +PF         G+S P      E     + L    +KLQ+          +  KYSL         + ++LT P +KRF +HF G+R TN + KPEW+L Q+L W  +H +F++  I P+L +        L  EF   L+ L  EKL   +   L DD L  HL+DE ++F++EL  +  G P    +C+ +L EE   + W+ +E+K A++ +  ++     W  ++ D+  +++     VP C E F+T++ ++ +RY+N+   S +  F+ +  D ++ F + + Q    E        YC+I+N   Y+  +L +W+ ++ FL        +  + +T    +    A  E  +   FD  I  LE+   +++   + ++   +K+  K YK E W SLP   +  + +LSS AC L+L +++HL  LE++    +F   W+     +D  ++ EI+   HFNEGGA+QLQFD+ +NL+ LF  Y  R ENYFK ++E+CI+LNL  GSALL+K+ L+  +A         L E  I+ L+ + V  +++ R +WP
Sbjct:  115 QFLNQFLEQETHLFSAINSHLLTAQPWMDDLGTMISQIEEIERHLAYLKWISQIEELSDNIQQYLMTNNVPEAASTLVSMAELDIKLQESSCTHLLGFMRATVKFWHKILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPA--SAPEIYSYLETLFCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLT-PLQKRFRYHFRGNRQTNVLSKPEWYLAQVLMWIGNHTEFLDEKIQPILDKVGSLVNARL--EFSRGLMMLVLEKLATDIPCLLYDDNLFCHLVDEVLLFERELHSVH-GYPGTFASCMHILSEETCFQRWLTVERKFALQKMDSMLSSEAAWVSQYKDITDVDE---MKVPDCAETFMTLLLVITDRYKNLPTASRKLQFLELQKDLVDDFRIRLTQVMKEETRASLGFRYCAILNAVNYISTVLADWADNVFFLQLQQAALEVFAENNTLSKLQLGQLASMESSV---FDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLSLPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIILANHFNEGGAAQLQFDMTRNLFPLFSHYCKRPENYFKHIKEACIVLNLNVGSALLLKDVLQ--SASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWP 788

The following BLAST results are available for this feature:

BLAST of TCONS_00055327-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055327-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RINT1	4.576e-89	28.92	RAD50-interacting protein 1 OS=Homo sapiens GN=RIN...	[more]

You are here

TCONS_00055327-protein (polypeptide) - C. hemisphaerica