TCONS_00055529-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055529-protein
Unique NameTCONS_00055529-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055529-protein ID=TCONS_00055529-protein|Name=TCONS_00055529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
MSTANDEKENLMNSTSKDVDEGSPRHCHKSQTSLKVYPQRWLMLFIFSLC
TTLNGFMFLGLSAVANVASAYYNVSTVSIEWLANMGVLIFVFVSLPVAYL
VSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSI
VQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLT
IVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPDRKNLTFLQS
LKMLYKDVNFQMVAQAFGINSGLLLAVAVVLSQLVVWRHGASPAIQHFIG
WTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLT
LSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILS
NIYGFITIYAFGKLIESGFPLTTICLILLLYLLSTIFVTFAKTELKRSKT
ESTSIMIEFDWSDDEVDIDGQNKVFLDDTP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034928XLOC_034928Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055529TCONS_00055529Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 35..244
e-value: 9.1E-20
score: 70.3
NoneNo IPR availableGENE3D1.20.1250.20coord: 248..456
e-value: 6.1E-12
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 48..406
e-value: 1.7E-18
score: 66.5
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 43..446
score: 16.461
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 44..418
e-value: 1.8477E-14
score: 71.9613
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 26..448

Blast
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BLAST of TCONS_00055529-protein vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.172e-44
Identity = 108/429 (25.17%), Postives = 218/429 (50.82%), Query Frame = 0 
Query:   34 LKVYPQRWLMLFIFSLCTTLNGFMFLGLSAVANVASAYYNVSTVSIEWLANMGVLIFVFVSLPVAYLVSRYGVRIVLTVATGLMVLCAVFQYLGAGKDGYTYVLIGQFFYGVSYGSIVQIPGQLSANWFAPHERGMSTAIGVLMNILGVAVGFIQPSLMIPASNDLTIVAIGMENFFKSRLIVALIIFLVTLILYREYPPSPPSIIPD------RKNLTFLQSLKMLYKDVNFQMVAQAFGINSGLLLAVAVVLSQLVVWRHGASPAIQHFIGWTGAMGDIAACASMLVGGFVQDRYSKHRELAIVLNAGSFIFWLVFALVLTLSNNLYILFLSYAIFAVFSIPYFGSGIEHIAEMTSPVPEGTSSSIVLILSNIYGFITIYAFGKLIES-GFPLTTICLILLLYLLSTIFVTFAKTELKRSKTESTSI 455
            +KV  +RW ++ +FS  +  N F ++   ++ N+   +Y VS  +I+WL+   +L ++ + LPVA+L+ ++G+R +    + L  L A  +        +   ++GQ    V+   I+ +P ++++ WF  +E   + ++ V  N LG+A+GF+ P +++P   D   +A  +   F     VA ++ ++ +I+++E P  PPS            + ++L S+  L+K++NF ++   +G+N+G   A++ +L+++V+W +   P  +   G  G    IA     ++ G   DR   ++E  +V+   + +  +V+   L L  +L+++F++      F   Y   G E   E+T P  EG SS ++ I + ++G I   + G++I++ G     I L + L  L      F K +L+R K    ++
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHY---PGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFL-TLGAALTAFIKADLRRQKANKETL 501
The following BLAST results are available for this feature:
BLAST of TCONS_00055529-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC21.172e-4425.17Feline leukemia virus subgroup C receptor-related ... [more]
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