VEGF related ligand (polypeptide) - C. hemisphaerica

Overview
NameVEGF related ligand
Unique NameTCONS_00055555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055555-protein ID=TCONS_00055555-protein|Name=VEGF related ligand|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MRISSVFVLLVFVSLCLAKKGYYRKIQDGRFKPVRVIRPKVVTQFDKNKM
EVANKMKKVKNMEDFLRVFKVPYVKKRRISLAKPQGETHTFLETHTLLGT
TDSDSKLEAPEFEFFIKKPTIGKEQSLVGESNRHTILGTSEKSSESVKLS
DEDLGCQPRPTIYSLTASHNYFDYPSCFTLYQCGGCCNSKPGNICRPTEL
SVKTVSHVRLSYITNRYTQETVRLNHHKKCECRCKIDATDCSQTQTFDPN
LCTCVCSGQLQPCAENKVWSNNECGCLCKTSPQRCPFRKEWDKTKCSCQC
IPKKCGVGESQDPTTCYCAKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034940XLOC_034940Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055555TCONS_00055555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000072PDGF/VEGF_dom
IPR029034Cystine-knot_cytokine
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000072PDGF/VEGF domainSMARTSM00141PDGF_2coord: 155..234
e-value: 5.0E-5
score: 31.1
IPR000072PDGF/VEGF domainPFAMPF00341PDGFcoord: 156..232
e-value: 7.1E-10
score: 39.0
IPR000072PDGF/VEGF domainPROSITEPS50278PDGF_2coord: 172..237
score: 14.196
IPR029034Cystine-knot cytokineGENE3D2.10.90.10coord: 46..242
e-value: 3.0E-23
score: 82.0
IPR029034Cystine-knot cytokineSUPERFAMILY57501Cystine-knot cytokinescoord: 153..237

Blast
The following BLAST results are available for this feature:
BLAST of VEGF related ligand vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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