TCONS_00055591-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055591-protein
Unique NameTCONS_00055591-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055591-protein ID=TCONS_00055591-protein|Name=TCONS_00055591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MSKQYRFASGSPSKRGEKAGGISAAAFQDHFSRRLNLDDGKPKRTINHPL
PVVKRKEVKAKQKKTDLPSKEKDLTDILKGKNDERVLSPDGNSGAAALSK
KNMSLAEKYGLLPSPIMNKEKVLSERQWEVLKRKAMVRGDIESKCPICKE
DYTLFREQILLSCSHTFHKKCIYSFEKYSGKQTCPICRFENYERRLIFDG
AFICSNKAALKIQSKWRAYTVRKRFLSENKDRVPQNLMLRKKFYEKKFMN
MAEEIHNSYDIHSANVDSFIAEIDRNIATSKSLMENLNFNSESDSWSEIH
NLALRRDNNECPICLGLLNSSKKIVLLNCSHLFHERCLASFETYSACSNH
LCPVCRSMYMKKEYTVKQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034963XLOC_034963Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055591TCONS_00055591Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR000048IQ_motif_EF-hand-BS
IPR027370Znf-RING_LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 145..187
e-value: 2.0E-6
score: 37.4
coord: 311..355
e-value: 1.0E-6
score: 38.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 309..356
e-value: 1.3E-8
score: 34.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 311..356
score: 12.74
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 145..188
score: 12.961
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 144..190
e-value: 3.8911E-9
score: 51.2924
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 310..357
e-value: 1.00978E-7
score: 47.0552
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 52..214
e-value: 8.3E-16
score: 57.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 284..364
e-value: 1.2E-12
score: 46.5
IPR000048IQ motif, EF-hand binding sitePFAMPF00612IQcoord: 207..225
e-value: 2.0E-5
score: 23.8
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 205..234
score: 8.645
NoneNo IPR availableGENE3D4.10.270.10coord: 215..254
e-value: 5.2E-5
score: 22.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 144..194
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 310..362
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 145..185
e-value: 2.2E-9
score: 37.1

Blast
[Close]
BLAST of TCONS_00055591-protein vs. Swiss-Prot (Human)
Match: RNF32 (RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.010e-66
Identity = 130/364 (35.71%), Postives = 196/364 (53.85%), Query Frame = 0 
Query:   21 GISAAAFQDHFSRRLNLDDGKPKRTINHPLPVVKRKEVKAKQKKT----DLPSKEKDLTDILKGKNDERVLSPDGNSGAAALSKKNMSLAEKYGLLPSPIMNKEKVLSERQWEVLKRKAMVRGDIESKCPICKEDYTLFREQILLSCSHTFHKKCIYSFEKYSGKQTCPICRFENYERRLIFDGAFICSNKAALKIQSKWRAYTVRKRFLSENKDRVPQNLMLRKKFYEKKFMNMAEEIHNSYDIHSANVDSFIAEIDRNIATSKSLMENL----NFNSESDSWSEIHNLALRRDNNECPICLGLLNS-----------SKKIVLLNCSHLFHERCLASFETYSACSN---HLCPVCRSMYMKK 362
             ++A A QDH    L L +       +H    V++KE K+ ++ T    D   K+      L+    E VL P             ++LA+K GL    I      LS  +WE +K++++++GD    CPICKE++ L R Q+LLSCSH FHK C+ +FEK++ K+TCP+CR   Y+ R+I DGA +   K   +IQ+ WR   VRK + +  K   P +  LRKKF+EKKF  ++  I  SY+    N++   AEID+ +A ++S+++ L          + W +I   ALRR+ +EC ICL  L++           S+++ LL+CSH+FH  CL + E +S       H CP+CRS Y KK
Sbjct:   15 AVNAVALQDHILHDLQLRNLS---VADHSKTQVQKKENKSLKRDTKAIIDTGLKKTTQCPKLEDSEKEYVLDPKPPP---------LTLAQKLGL----IGPPPPPLSSDEWEKVKQRSLLQGDSVQPCPICKEEFEL-RPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRKNQYQTRVIHDGARLFRIKCVTRIQAYWRGCVVRKWYRNLRKTVPPTDAKLRKKFFEKKFTEISHRILCSYN---TNIEELFAEIDQCLAINRSVLQQLEEKCGHEITEEEWEKIQVQALRRETHECSICLAPLSAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLCRSCYQKK 358
The following BLAST results are available for this feature:
BLAST of TCONS_00055591-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF323.010e-6635.71RING finger protein 32 OS=Homo sapiens GN=RNF32 PE... [more]
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