TCONS_00055689-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055689-protein
Unique NameTCONS_00055689-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055689-protein ID=TCONS_00055689-protein|Name=TCONS_00055689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
LQENKYDKKKSNIMNKEIKDEQKVNSVYIKIGSKDSILDFFAVEKHEFVD
ANIDDDIPLKIKIEEENNSLSPVEEVSDNHFKCTSFFNIKIELDEIIPPT
NLTINATNLQVENAETRERKNNLAPKRSKRNFICKECGKDFQFYCHFKKH
LRIHTGERPFKCQECGKKFSQRCNLIRHSNIHNGIKSFKCKECGRCFARK
DTLNIHIKSHKRKTHVHIEEQVNAFLCNKCNKCFNSLSHLTAHVKIHSEE
IVPSDGKSESKELSTKKHQDLNLLDVASLIVENEERRVRKIDHSKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035044XLOC_035044Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055689TCONS_00055689Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 188..210
e-value: 4.7E-4
score: 29.5
coord: 132..154
e-value: 0.47
score: 19.5
coord: 160..182
e-value: 0.0022
score: 27.3
coord: 225..247
e-value: 0.019
score: 24.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 162..182
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 227..247
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 190..210
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 134..154
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 132..159
score: 15.937
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 160..187
score: 14.544
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 225..250
score: 12.113
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 188..215
score: 12.632
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 218..250
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 158..210
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 129..169
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 163..180
e-value: 1.7E-15
score: 56.3
NoneNo IPR availableGENE3D3.30.160.60coord: 144..162
e-value: 6.5E-13
score: 48.4
NoneNo IPR availableGENE3D2.20.28.30coord: 181..199
e-value: 5.4E-11
score: 42.1
coord: 200..235
e-value: 2.3E-12
score: 46.5
NoneNo IPR availableGENE3D3.30.160.60coord: 236..269
e-value: 1.2E-6
score: 27.9
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 226..247
e-value: 7.2E-4
score: 19.8
coord: 188..210
e-value: 8.8E-6
score: 25.8
coord: 160..182
e-value: 2.9E-4
score: 21.0
NoneNo IPR availableGENE3D3.30.160.60coord: 103..143
e-value: 1.2E-8
score: 34.4

Blast
[Close]
BLAST of TCONS_00055689-protein vs. Swiss-Prot (Human)
Match: ZNF22 (Zinc finger protein 22 OS=Homo sapiens GN=ZNF22 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.741e-28
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 0 
Query:  128 SKRNFICKECGKDFQFYCHFKKHLRIHTGERPFKCQECGKKFSQRCNLIRHSNIHNGIKSFKCKECGRCFARKDTLNIHIKSHKRKTHVHIEEQVNAFLCNKCNKCFNSLSHLTAHVKIHSEE 250
             K++  C +CGK F    +  +H RIHTGE+P+KC ECG+ F Q  NLI+H  IH G K ++C ECGRCF++    + H+  H+R    H  E+   + C++C KCF+  SHL  H+K+H EE
Sbjct:   79 GKKSHKCADCGKSFFQSSNLIQHRRIHTGEKPYKCDECGESFKQSSNLIQHQRIHTGEKPYQCDECGRCFSQ----SSHLIQHQR---THTGEK--PYQCSECGKCFSQSSHLRQHMKVHKEE 192
The following BLAST results are available for this feature:
BLAST of TCONS_00055689-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF224.741e-2843.90Zinc finger protein 22 OS=Homo sapiens GN=ZNF22 PE... [more]
back to top