TCONS_00055756-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055756-protein
Unique Name	TCONS_00055756-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	340

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055756-protein ID=TCONS_00055756-protein|Name=TCONS_00055756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
GKEFKTQKKMEETSVRFQLLSEEELSKIAEESKNKNTKRSTNTWINVYKS
WAVQRNMKVQLEEYSPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGL
HRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITR
DEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQT
KTDEESGLVYIEYFEPPTKTRQHGLHPNPRVTNPKMFEIPDNERCPVRIF
NFYVSKRPSNLQNTGRFYLSPKSVYSKDVDEPWFKSVAVGKNKIATFMKE
IISGTNIEKGKKITNHSGRKLFVKKMKAANIPETSIIKIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035099	XLOC_035099	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055756	TCONS_00055756	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021893	DUF3504

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021893	Protein of unknown function DUF3504	PFAM	PF12012	DUF3504	coord: 148..301 e-value: 8.5E-36 score: 123.2

Blast

[Close]

BLAST of TCONS_00055756-protein vs. Swiss-Prot (Human)
Match: ZMYM3 (Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 8.502e-23
Identity = 70/253 (27.67%), Postives = 125/253 (49.41%), Query Frame = 0

Query:   65 SPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGLHRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITRDEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQTKTDE------ESGLVYIEYFEP--PTKTRQHGLHPNPRVTNPKMFEIPDNE----RCPVRIFNFYVSKRPSNLQNTGR-FYLSPKSVYSKDVDEP-WFKSVAVGKNKIATFMKEIIS 303
            S  EL+  L QF  E+ + +G+ YEPDS+  +  G+ +YL+ENN   +I  +  +   ++ L      ++   +   PN +   +R EE+ LW   +LG+ +P  LL+T+ F N + FG +  +EH  L+  N   ++ +       + +V I Y+ P    K R  G     R     + E  +N     RCPV+ + FY+SK P +L+     FYL P+   S   + P W+  + + ++ + + +  I++
Sbjct: 1107 SAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLL---PN-NTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPER--SCIAESPLWYSVIPMDRSMLESMLNRILA 1353

The following BLAST results are available for this feature:

BLAST of TCONS_00055756-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055756-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZMYM3	8.502e-23	27.67	Zinc finger MYM-type protein 3 OS=Homo sapiens GN=...	[more]

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TCONS_00055756-protein (polypeptide) - C. hemisphaerica