TCONS_00055851-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055851-protein
Unique NameTCONS_00055851-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055851-protein ID=TCONS_00055851-protein|Name=TCONS_00055851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MTATATKSTREFIISNLQMITPELLIMAPGKSNITYYVKKTKNLDCDTLF
APLIKNLRDNGYKAERVIIFCDRSRLRDLYDSFENEFYNYYTYDERPFAM
FHRTTRPEIKERIIKAFQDPDGMVRILIATIASFENEFYNDYTYDERPFA
MFHRTTRPEIKERIIKAFQDPDGMVRILIATIASFENEFYNDYTYDERPF
AMFHRTTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKDLHRIIHF
GVPSDLDSYFQESGRAGRDDAQCSALLLLYPRCISRYVKKDIRDYVTNTQ
RCRREIHLEVYDSKPSKIQPKHTCCDFCHQRCECGNCESPEFLVDLLQSR
DEIELPDNELINDEVEEQVECREGESESEPEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035165XLOC_035165Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055851TCONS_00055851Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 187..270
e-value: 1.6E-14
score: 64.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 197..268
e-value: 5.5E-13
score: 49.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 159..326
score: 13.228
NoneNo IPR availableGENE3D3.40.50.300coord: 182..332
e-value: 6.1E-22
score: 77.5
coord: 31..135
e-value: 1.7E-6
score: 27.1
NoneNo IPR availableCDDcd00079HELICccoord: 149..269
e-value: 1.75717E-14
score: 68.4184
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..23
score: 6.737
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 198..310
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 26..280

Blast
[Close]
BLAST of TCONS_00055851-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.821e-17
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 0 
Query:  206 TTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKDLHRIIHFGVPSDLDSYFQESGRAGRDDAQCSALLLLYPRCI--SRYVKKDIR---------------DYVTNTQRCRREIHLEVYDSKPSK-----IQPKHTCCDFCHQRCE 333
            +TR +I  R ++        ++ +IATIAFGMGI+  D+ ++IH+G P D++SY+QE GRAGRD  Q S  +L  P  I  +R++  +IR               +   ++ RCRR+I L  ++ K  +     I     CCD C  R +
Sbjct:  801 STRKDIHHRFVR------DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLD 944
The following BLAST results are available for this feature:
BLAST of TCONS_00055851-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN1.821e-1734.00Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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