TCONS_00055899-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055899-protein
Unique NameTCONS_00055899-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055899-protein ID=TCONS_00055899-protein|Name=TCONS_00055899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp
MTTDLKQYSKTYHPMTSSSSSSGKHRRYKRRQTHIFIKLVCITVTLTTVL
VFLTLYKYLDSKQSKWRSNQQLVSKLHDDSYQSRKLLNVNNETTTTKAPV
IPQGIGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALH
VISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSA
VFNVLFVIGMCAMCSKTLLNLTWWPLLRDSIFYIIALILLIIFFSDSSIS
WHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTPIIDEKNE
NGFLSLPSMFSKNSFRNGAIQLVIHTLDPIAEAGVDDKLQKIKDHYDTIS
TDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISH
GKEEIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVAS
LFNDNDVNQNNGDTVNRNGVGMIDDASRRNSVRFSSRRLSRCSSRASCRS
HRGLAPVKKESPVEDIKDPEDGEGEDTGDEEEEEEGPVDLSWPDEIFERI
FYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSIVWIAVFSYLMLWWA
SEIGRAAGIDVEIMGLTFIAAGTSIPDLITSVVVARQGLGDMAVSSSIGS
NIFDVTVGLPLPWLAYSMSKSFKDVVVKNSGLFCSTILLFLMLVAVVITI
ALSKWRMTKMLGGIMFGLYVVFITLTLLLQLDVFACPFG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035197XLOC_035197Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055899TCONS_00055899Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004481K/Na/Ca-exchanger
IPR004837NaCa_Exmemb
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 22..251
e-value: 0.0068
score: 15.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..399
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 500..538
IPR004481Sodium/potassium/calcium exchangerTIGRFAMTIGR00367TIGR00367coord: 125..722
e-value: 2.4E-104
score: 346.8
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 127..269
e-value: 2.5E-25
score: 89.1
coord: 579..727
e-value: 9.6E-28
score: 96.9

Blast
[Close]
BLAST of TCONS_00055899-protein vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 6.486e-83
Identity = 132/266 (49.62%), Postives = 189/266 (71.05%), Query Frame = 0 
Query:  473 IDDASRRNSVRFSSRRLSRCSSRASCRSHRGLAPVKKES-PVEDIKDPEDGEGEDTGDEEEEEEGPVDLSWPDEIFERIFYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSIVWIAVFSYLMLWWASEIGRAAGIDVEIMGLTFIAAGTSIPDLITSVVVARQGLGDMAVSSSIGSNIFDVTVGLPLPWLAYSMSKSFKDVVVKNSGLFCSTILLFLMLVAVVITIALSKWRMTKMLGGIMFGLYVVFITLTLLLQLDVFACP 737
            +D+  R+N    ++  + +     S  +   + P    S PV++     + EG +    +EEE+ P+ L+WP E  +++ ++I  P++F + +T+PDVR+P  +K FP+TF  SI WIAVFSYLM+WWA ++G   GI  EIMGLT +AAGTSIPDLITSV+VAR+GLGDMAVSSS+GSNIFD+TVGLPLPWL Y++   F+ V V ++GLFC+ +LLF+ML+ V+++IAL KWRM K+LG IMFGLY VF+ +++LL+  +  CP
Sbjct:  396 VDENERQNG---AANHVEKIELPNSTSTDVEMTPSSDASEPVQNGNLSHNIEGAEAQTADEEEDQPLSLAWPSETRKQVTFLIVFPIVFPLWITLPDVRKPSSRKFFPITFFGSITWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPLPWLLYTVIHRFQPVAVSSNGLFCAIVLLFIMLLFVILSIALCKWRMNKILGFIMFGLYFVFLVVSVLLEDRILTCP 658

HSP 2 Score: 274.633 bits (701), Expect = 3.428e-82
Identity = 176/462 (38.10%), Postives = 258/462 (55.84%), Query Frame = 0 
Query:   20 SSSGKHRRYKRRQTHIFIKLVCI---TVTLTTVLVFLTLYKYLDSKQSKWRSNQQLVSKLH-DDSYQSRKLLNVNNETT--TTKAPVIPQG---------IGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALHVISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSAVFNVLFVIGMCAMCSKTLLNLTWWPLLRDSIFYIIALILLIIFFSDSSISWHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTP-------IIDEKNENGFLSLPSMFSKNS--------FRNGAIQLVIHTLDPIAEA-GVDDKLQKIKDHYDTISTDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISHGKE-EIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVA 449
            S SG  R Y  ++    I+++ +    V ++TV   ++ +   D++ +       +VS       Y  R LL++N++    T + P+  +G          GDYPKD+F++E+++ G I LHVIG++YMF+ALAI+CDEFFVP+L VI+  L ISDDVAGATFMAAGGSAPELFTS+IGVF + S VG GTIVGSAVFN+LFVIGMCA+ S+ +LNLTWWPL RD  FYI+ LI+LIIFF D+ I W ESL L   Y  YV+FM  N  +E  VK  I++        P          +K+E    + P +    S         RN   QL+IHTLDP+AE  G   KL+    +YDT++ + +     S+L        ++      H D N ++  +   V    + +    ++EM   ++ +   +  NG+ +  +   +A+      ++ +P S+A
Sbjct:   20 SLSGCRRHYSVKKKLKLIRVLGLFMGLVAISTVSFSISAFSETDTQST---GEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMKFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPLAEELGSYGKLK----YYDTMTEEGRFREKASIL--------HKIAKKKCHVDENERQNGAANHVEKIELPNSTSTDVEMTPSSDASEPVQ--NGNLSHNIEGAEAQT--ADEEEDQPLSLA 462
The following BLAST results are available for this feature:
BLAST of TCONS_00055899-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX26.486e-8349.62Sodium/potassium/calcium exchanger 2 OS=Homo sapie... [more]
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