TCONS_00055917-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055917-protein
Unique NameTCONS_00055917-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length140

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055917-protein ID=TCONS_00055917-protein|Name=TCONS_00055917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MNQIENQEDCFKVALKELNENIDTRSLDIEAIRDRIKLRPDILINRDDDE
FLVRFLRARKYNKDKAFELLCNYCQFRRKHQMFFKSLKVSCLRPVFEDGL
PMVSPVRDQLGRSVIFLFSGNWNTSLYTFEDILRALLXTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035212XLOC_035212Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055917TCONS_00055917Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001071CRAL-bd_toc_tran
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..35
NoneNo IPR availableGENE3D1.10.8.20coord: 8..79
e-value: 4.7E-13
score: 48.8
IPR001071Cellular retinaldehyde binding/alpha-tocopherol transportPRINTSPR00180CRETINALDHBPcoord: 98..122
score: 34.0
coord: 51..73
score: 56.52
IPR011074CRAL/TRIO, N-terminal domainSMARTSM01100CRAL_TRIO_N_2coord: 48..73
e-value: 3.2E-9
score: 46.6
IPR011074CRAL/TRIO, N-terminal domainPFAMPF03765CRAL_TRIO_Ncoord: 46..72
e-value: 5.1E-7
score: 29.7
IPR011074CRAL/TRIO, N-terminal domainSUPERFAMILY46938CRAL/TRIO N-terminal domaincoord: 11..87
IPR001251CRAL-TRIO lipid binding domainGENE3D3.40.525.10coord: 80..140
e-value: 6.2E-6
score: 25.5
IPR001251CRAL-TRIO lipid binding domainSUPERFAMILY52087CRAL/TRIO domaincoord: 93..137

Blast
[Close]
BLAST of TCONS_00055917-protein vs. Swiss-Prot (Human)
Match: CLVS2 (Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.808e-29
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 0 
Query:   17 ELNENIDTRSLDIEAIRDRIKLRPDILINRDDDEFLVRFLRARKYNKDKAFELLCNYCQFRRKHQMFFKSLKVS--CLRPVFEDGLPMVSPVRDQLGRSVIFLFSGNWNTSLYTFEDILRALLXT 139
            ELNEN DT   DI+ +RD +  RPDI   R DD F++RFLRARK++  +AF LL  Y ++R+++   FKS K +   ++   +DG P      D  GR ++ LF+ NW+ S YT  DILRA+L +
Sbjct:   19 ELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLS 143
The following BLAST results are available for this feature:
BLAST of TCONS_00055917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLVS28.808e-2944.00Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1[more]
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