TCONS_00055932-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055932-protein
Unique NameTCONS_00055932-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1134

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055932-protein ID=TCONS_00055932-protein|Name=TCONS_00055932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1134bp
ETDDGENNTKSDFNNTNTNSRVQVPAKENNSTASVAFQQKAKIEDQMNNE
NLEQLQKIFEDADEDGGGGLDIEEFGQAMKMAFGSSDELDDEQLQLMFMK
VDTNCDGTVDWEEFCSYMLLENQQKDSMTRDVIDLPFPNAAREIANPHHD
SLAKITYFPSLGVAQRASNAVDSEELDNGNGRYISCSKDGLFVFWNLDLQ
IQRTINLNDMQTNGSKSKQIWVTDVVALANVKKVAVATTERDITFYDCSA
NSFEKQFLLTGLPHCVLCMDYWFNPQNMNEGVLVTGDAGGSVSCMQFTQA
TVGLFDVSIGKQHNMSTSTVRRIPFQELCVGRHSSVNTILFSDLHDDWVR
KVKYIPNLQCFISCSNTGTSSLFLGDLQNKKIKSSFKIPKGVYSFDYDKE
NNIIVTGGLDRYIRLWNPYVTIKSTSVLKGHNSSVIHIVACADQIISFSK
DKMIKIWDTRDHCCIQTIPSRLTDFGAHQITTVYYNRKLQTLLLGSCSIA
VLEKRKPEEVNVSLITEEEQLSHPKPLCGALYNDLFNQVVSACHGSIVNV
WHVDTGEKAIMFTNAHNGHEITSMTFDPTKRRLITGSRNGSVKIWNFNNG
ACLHSMNALDDSEVTGIVCLKQRIVTVGWNHKIMVYRDVRGAEDDPPKMW
NNLHKDDILSVDHTKAGLMVTTSYDGQVCCWNIETAHVFCQMNVNDKRTR
SNQGGKIAWNNRILPRRATIDLKPDDINKHLSVDKVIFLQNREQDKKTAT
LLVSVDGIIQAWSVQGGLLGRFDATGRRNDESILALKSDSLNHILFTGDS
SGYIKIWDISDYCIKQQQTPVQTRSPSPLDQFSRKKAGNSLAGLLKRSTV
DSFNRMTSSNTKSSSSKSSSDIFDSICSPPETLLQFRGHGKSIVSIDYCE
KKQLIVTASTDCYVRLWTINGKYLGTFGQKQPWDSLENSVNLKKARRLPP
DLQRIASTQTLKVVNGSAPRWKLARNIFTILHMGRRNTKSAVKDEDVTQI
ITSETSAINRHQILDIPIHEVLGKNYKPKQRHRMPPIIKPKINNLQCVAF
SSLPFKELEHIEEPKMPQVLVHAMAARQQQQQQQNNRTVASAINGDQNRK
SQYSNNRKGGTSPIRHTVNNRLLPAIAMNRNKPN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035217XLOC_035217Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055932TCONS_00055932Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR018247EF_Hand_1_Ca_BS
IPR017986WD40_repeat_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 93..121
e-value: 0.71
score: 18.9
coord: 54..82
e-value: 0.0082
score: 25.3
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 53..118
e-value: 1.3E-11
score: 44.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 89..124
score: 13.091
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 50..85
score: 12.951
IPR002048EF-hand domainCDDcd00051EFhcoord: 54..118
e-value: 1.9405E-11
score: 60.2541
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 421..458
e-value: 0.016
score: 24.4
coord: 599..637
e-value: 50.0
score: 6.3
coord: 879..918
e-value: 4.6E-5
score: 32.8
coord: 379..417
e-value: 0.0034
score: 26.6
coord: 514..552
e-value: 52.0
score: 6.2
coord: 555..596
e-value: 6.7E-6
score: 35.6
coord: 644..682
e-value: 0.48
score: 19.0
coord: 332..374
e-value: 23.0
score: 8.4
coord: 769..808
e-value: 1.2
score: 16.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 425..458
e-value: 0.074
score: 13.9
coord: 883..917
e-value: 0.001
score: 19.7
coord: 390..417
e-value: 0.02
score: 15.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 392..417
score: 9.807
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 428..467
score: 10.041
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 564..605
score: 12.58
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 886..920
score: 11.912
NoneNo IPR availableGENE3D1.10.238.10coord: 66..120
e-value: 4.2E-13
score: 48.7
NoneNo IPR availableGENE3D1.10.238.10coord: 32..65
e-value: 6.8E-4
score: 19.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1077..1134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 743..1052
e-value: 4.1E-15
score: 55.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 518..714
e-value: 1.2E-23
score: 83.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 137..517
e-value: 3.5E-33
score: 114.7
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 550..630
e-value: 2.7E-5
score: 24.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 583..597
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 102..114
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 886..927
score: 10.548
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 385..605
score: 18.932
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 180..301
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 344..635
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 622..685
coord: 734..816
coord: 884..922
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 41..127

Blast
[Close]
BLAST of TCONS_00055932-protein vs. Swiss-Prot (Human)
Match: WDR49 (WD repeat-containing protein 49 OS=Homo sapiens GN=WDR49 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.760e-57
Identity = 149/481 (30.98%), Postives = 232/481 (48.23%), Query Frame = 0 
Query:  384 SSFKIPKGVYSFDYDKENNIIVTGGLDRYIRLWNPYVTIKSTSVLKGHNSSVIHIVACAD--QIISFSKDKMIKIWDTRDHCCIQTIPSRLT---DF-------GAHQITTVYYNRKLQTLLLGSCSIAVLEKRKPEEVNVSLITEEEQLSHPKPLCGALYNDLFNQVVSACHGSIVNVWHVDTGEKAIMFTNAHNGHEITSMTFDPTKRRLITGSRNGSVKIWNFNNGACLHSMNALDDS--EVTGIVCLKQRIVTVGWNHKIMVYRDVRGAEDD-PPKMWNN--LHKDDILSVDHTKAGLMVTTSYDGQVCCWN--IETAHVFCQMNVND--KRTRSNQGGKIAWNNRILPRRATIDLKPD-------DINKHLSVDKVIFLQNREQDKKTATL-LVSV--DGIIQAWSV-QGGLLGRFDATGRRNDESILALKSDSLNHILFTGDSSGYIKIWDISDYCIKQQQTPVQTRSPSPLDQF 832
            +SF I +G+++FDY    N+I T G++  + LWNPYV  K   VL GH++SVI +    +  Q+ SFSKDK++++WD +    IQ I        DF        AH    + +N +L  L + S +   ++                  SH K +   LYN +  QV+S+  GS V+ W +DTG+K   FT  H   EI++M  D  + RL+TGS +G+VKIW+F NG C H++N   D   +++ I+ LK++I+  GW   I V+R     +    P+ W     H DDIL         +VT SYDG++  WN   E AH     +     K     +  K+    R  P     D           D     +V ++ FL+ R+    T    LVS    G ++ W + +  LL  F A    +    + + +D +N  L TGD  G++KIW+I +YC+   +  + T++P+ +  F
Sbjct:   14 TSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVVSKPVGVLWGHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRIACSFPKSQDFRCLFHFDEAHGRLFISFNNQLALLAMKSEASKRVK------------------SHEKAVTCVLYNSILKQVISSDTGSTVSFWMIDTGQKIKQFTGCHGNAEISTMALDANETRLLTGSTDGTVKIWDF-NGYCHHTLNVGQDGAVDISQILILKKKILVTGWERAITVFRPQNFNQFFIQPEEWKGGIQHHDDILCAAFLPPQTLVTGSYDGEIVLWNNSTENAHHVLHPDYQRLLKSKLDTKPQKLLSAGRSQPSHPMADHSTTGVRNFEIDTEGKNAVMRLCFLKARKNTAVTGGANLVSCGGSGYVRFWDIYKKQLLAEFLA---HSGVGSIIMSTDKMNRYLTTGDLDGWLKIWNIEEYCLNSSKNKI-TKAPTLIRSF 471
The following BLAST results are available for this feature:
BLAST of TCONS_00055932-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR496.760e-5730.98WD repeat-containing protein 49 OS=Homo sapiens GN... [more]
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