TCONS_00055985-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055985-protein
Unique NameTCONS_00055985-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055985-protein ID=TCONS_00055985-protein|Name=TCONS_00055985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=876bp
LAKIIKQNQTKAYHTFSFKMVELQAEKPKTKKTAMVLEEVDLPYEEEILR
HPYSVKCWMRYVEHKIATGGKGHTVNIIYERALKELPGSYKLWYNYLRLR
RLQTKGRCISDPLFEDANNAHERSLVFMHKMPRIWLDYVQFLMDQKFISR
TRHVFDRALRALPITQHPRIWPKYLAFIDSVDLPEMAVRVYRRYLKVEPE
NTEKYIDYLIDIGWLDEAALKLAEIIDDDKFVSKKGKSNHQLWHELCELI
SKNPEKVKSLKVADIIHGALRRFTDGLGQLWCSLADYYIRGGHFEKARDV
YEEAIQTVMTVRDFGEVFDAYAQFEESMISAKMEESQESGLTADGEIDLE
LRMARFELLMDRRPLLLNSVLLRQNPHNVHEWHKRVQLQEDKPLDVINTY
TEAVQTVDPMMASGKPHTLWVEFAKFYEKHEQLKEARIIFEKALKVRYRH
VEDLANVWCEYGEMEIRHDNYESALKVLRRATAVPRKKIGTNYHDQKEPV
QNRVHKSIKVWSMYADLEESLGTFQSTKAVYNRIIDLRIATPQIILNFAQ
ILEENKYFEESYKAYERGIALFKWPHVFDIWNTYLAKFIQRYGGTKLERA
RDLFEQCLEKCPGKFAKHLYLMYAKLEEDHGLSRHAMAVYERAVKNVPKN
ERYELFNIYVKRAAELFGITHTREIYEKAIESLPEENAREVSIRYAALET
KLGEIDRARAIYSYGSQMCDPRTTAHFWKAWHDFEVKHGNEDTFREMLRI
KRSVQAKYNTQTNFMSAQILATQATEAAANDMQKLEEQATSLADEASSDK
PPPTKGVLFVRGESQNTEVDEMGGDVPKNPEEIQLDDGDSDSDSDSSSED
EEAEADGDVPQQKKVPDEVFGGIKRD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035237XLOC_035237Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055985TCONS_00055985Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003107HAT
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 775..795
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 789..876
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 455..488
e-value: 140.0
score: 4.9
coord: 278..311
e-value: 43.0
score: 9.4
coord: 542..575
e-value: 310.0
score: 1.8
coord: 417..450
e-value: 16.0
score: 13.3
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 279..306
e-value: 0.026
score: 14.6
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 703..737
e-value: 2.3
score: 17.2
coord: 70..102
e-value: 7.1
score: 15.6
coord: 292..327
e-value: 7.1E-4
score: 28.9
coord: 631..665
e-value: 430.0
score: 3.4
coord: 146..180
e-value: 0.096
score: 21.8
coord: 35..67
e-value: 210.0
score: 5.7
coord: 469..520
e-value: 73.0
score: 9.1
coord: 667..701
e-value: 6.8
score: 15.6
coord: 595..629
e-value: 4.0E-5
score: 33.0
coord: 556..590
e-value: 27.0
score: 12.3
coord: 112..144
e-value: 66.0
score: 9.4
coord: 522..554
e-value: 300.0
score: 4.6
coord: 431..467
e-value: 7.6
score: 15.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 499..583
e-value: 1.5E-7
score: 30.7
coord: 668..793
e-value: 1.0E-7
score: 31.3
coord: 43..182
e-value: 3.1E-14
score: 52.4
coord: 183..343
e-value: 1.2E-11
score: 44.1
coord: 584..667
e-value: 1.1E-8
score: 34.4
coord: 369..498
e-value: 2.9E-17
score: 62.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 115..205
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 502..666
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 45..100
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 231..485
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 671..749
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 417..488
score: 10.103
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 278..311
score: 7.509
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 508..650
score: 8.89

Blast
[Close]
BLAST of TCONS_00055985-protein vs. Swiss-Prot (Human)
Match: SYF1 (Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2)

HSP 1 Score: 1105.12 bits (2857), Expect = 0.000e+0
Identity = 529/841 (62.90%), Postives = 660/841 (78.48%), Query Frame = 0 
Query:   48 ILRHPYSVKCWMRYVEHKIATGGKGHTVNIIYERALKELPGSYKLWYNYLRLRRLQTKGRCISDPLFEDANNAHERSLVFMHKMPRIWLDYVQFLMDQKFISRTRHVFDRALRALPITQHPRIWPKYLAFIDSVDLPEMAVRVYRRYLKVEPENTEKYIDYLIDIGWLDEAALKLAEIIDDDKFVSKKGKSNHQLWHELCELISKNPEKVKSLKVADIIHGALRRFTDGLGQLWCSLADYYIRGGHFEKARDVYEEAIQTVMTVRDFGEVFDAYAQFEESMISAKMEESQESGLTADGEIDLELRMARFELLMDRRPLLLNSVLLRQNPHNVHEWHKRVQLQEDKPLDVINTYTEAVQTVDPMMASGKPHTLWVEFAKFYEKHEQLKEARIIFEKALKVRYRHVEDLANVWCEYGEMEIRHDNYESALKVLRRATAVPRKKIGTNYHDQKEPVQNRVHKSIKVWSMYADLEESLGTFQSTKAVYNRIIDLRIATPQIILNFAQILEENKYFEESYKAYERGIALFKWPHVFDIWNTYLAKFIQRYGGTKLERARDLFEQCLEKCPGKFAKHLYLMYAKLEEDHGLSRHAMAVYERAVKNVPKNERYELFNIYVKRAAELFGITHTREIYEKAIESLPEENAREVSIRYAALETKLGEIDRARAIYSYGSQMCDPRTTAHFWKAWHDFEVKHGNEDTFREMLRIKRSVQAKYNTQTNFMSAQILATQAT-----------EAAANDMQKLEEQATSLADEASSDKPPPTKG-VLFVRGESQNTEVDEMGGDVPKNPEEIQLDDGDSDSDSDSSSEDEEAEADGDVPQQKKVPDEVFGGIKRD 876
            I+R+ +SVKCW+RY+E K   G     +N +YERALK LP SYKLWY YL+ RR Q K RC++DP +ED NN HER+ VFMHKMPR+WLDY QFLMDQ  ++ TR  FDRALRALPITQH RIWP YL F+ S  LPE AVR YRR+LK+ PE+ E+YI+YL     LDEAA +LA +++D++FVSK GKSN+QLWHELC+LIS+NP+KV+SL V  II G L RFTD LG+LWCSLADYYIR GHFEKARDVYEEAI+TVMTVRDF +VFD+YAQFEESMI+AKME + E G   + ++DLELR+ARFE L+ RRPLLLNSVLLRQNPH+VHEWHKRV L + +P ++INTYTEAVQTVDP  A+GKPHTLWV FAKFYE + QL +AR+I EKA KV ++ V+DLA+VWC+ GE+E+RH+NY+ AL++LR+ATA+P ++    Y D  EPVQNRV+KS+KVWSM ADLEESLGTFQSTKAVY+RI+DLRIATPQI++N+A  LEE+KYFEES+KAYERGI+LFKWP+V DIW+TYL KFI RYGG KLERARDLFEQ L+ CP K+AK LYL+YA+LEE+ GL+RHAMAVYERA + V   ++Y++FNIY+KRAAE++G+THTR IY+KAIE L +E+ARE+ +R+A +E KLGEIDRARAIYS+ SQ+CDPRTT  FW+ W DFEV+HGNEDT +EMLRI+RSVQA YNTQ NFM++Q+L    +           ++  +DM+ LE++A  LA EA  D+P   +  +LFVR ++   E+ E+   V  NPEEIQL + + + + D    +   E       Q+ VP  VFG +K D
Sbjct:   28 IMRNQFSVKCWLRYIEFK--QGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARR--AEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQV--NPEEIQLGEDEDEDEMDLEPNEVRLE-------QQSVPAAVFGSLKED 855
The following BLAST results are available for this feature:
BLAST of TCONS_00055985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYF10.000e+062.90Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=X... [more]
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