TCONS_00056014-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056014-protein
Unique Name	TCONS_00056014-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1405

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056014-protein ID=TCONS_00056014-protein|Name=TCONS_00056014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1405bp
MKRSHDDPDPYGPRRPVPGPPPGLTGAPHPPTHSNFPHPVLPGQLAHSFE
QMRENLPRPPFQTPHLPVANPPPAAPQPVAPPTHLTPPTHLTPQGPPAHQ
QSKPAYQTLTPNATHPPTAAGQQQYQRLKVEDALSYLDQVKLQFGNQPQV
YNEFLDIMKEFKSQTIDTPGVISRVSALFKGHPDLIVGFNTFLPPGYKIE
VSLTDINTVNVCAPTGTTTHLISGSGLIAAPTQPSQKNNTTSGVAVSTSP
GTSTSNSSTITTTSTTSVPKSPTASVAIALSSGVTAKTTSPSVPPSVALP
LQSPGMQSQTQAQHHAINYVTKIKNRFQGQPEVYQKFLDILNNYQTEQKA
IKENSVDQYGRPLQEQEVFNREGKLASEVYAQVAKLFNKQEDLLKEFSQF
LPDATGSSFSSGVSALSTAPIPSYQPLSKKSSSNNSSSKSMSSKPKKPIP
SLQSSNSSKNNNSSNNNNNTDAMETETKGEPGGDKHLKKRHKSALKDVTL
AEAIKLGNFSEFAFFEKVRKALKSPEVYENFLRCLVLFNSEVITRSELIQ
LTTTFLGKFPDLFTWFKVFLGYKENQQTETNITTFKDRGTGGELAHLEID
FASCKRSGASYRAYPNTYVQPKCVGRTQLCKEVLNDTWVSLPSWSEDTQF
PGTRKTQYEEYIYKCEDERFELDVVIETNLCTIKVLEGVQKKLSRMSSDD
QQKFRLDNSLGGTSDIIHKKAIYRIYGDKSPEVIDGLKKTPHVVLPLVLK
RLKQKDEEWRTAQKQFNKIWRDQNEKYYLKSLDHQGINFKQNDLKNIRPK
SLVREIEQILEERTDQMEDGNAEIVGPHFEFSYPDASLLEDATALIIHHM
KRQTGIHKEDKTKIKSILLIFLQEMFFASPGELSDDEQDADEEMPDATAP
SVKSPESTNTPSKSSSKDKEAVLSPSTLIKEENADDFYNLFFVNNTWYIL
LRLHQMLCERLLKMYKQAMKVASFEARDKKYRHEGTAEALRLKKPAVTDV
EDFYPAFQDMVKNLLDGQLETNQYEDTLRETFGVNSFVAFTMDKLIQNIV
RQLHSLVTDETSLKLMDIFKQEKKNKAAGGPSVTATARTPFELSYQKKVE
NLLVDENCYKIYLHKNKTSCKVTFELLPTEDDQSEDQNEIEKWSDYIEKY
IGSSEIVTELRDHLLKKPIFLLRNARVIRKRVEDAQNEKESNTIDEKESK
EKNEEENEKPVEVKKEENEEAEKNEDEEAAKEEDVEMKEVAKEEKDEKEK
EIVTLPSDERPAITPEPKDVQEKESEMFPDVIMHNGLGCKISMNSYKIKY
VSGTSDFMYRKNSSSKSQKSHPKINMKLHNQFESQHSSWLHENTTRDQCH
QAEEWLLGKAQTENFLPCLTTKDSGRVGGLMVNKYSVVYTKDLNKTPVTS
PKPPS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035249	XLOC_035249	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056014	TCONS_00056014	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013194	HDAC_interact_dom
IPR031693	Sin3_C
IPR003822	PAH

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1187..1207
None	No IPR available	COILS	Coil	Coil	coord: 1211..1251
None	No IPR available	GENE3D	1.20.1160.11		coord: 307..406 e-value: 5.2E-27 score: 93.3
None	No IPR available	GENE3D	1.20.1160.11		coord: 505..575 e-value: 8.2E-15 score: 54.0 coord: 123..197 e-value: 4.2E-26 score: 90.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 882..923
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1183..1251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..490
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..124
IPR013194	Histone deacetylase interacting domain	SMART	SM00761	hdac_interact2seq4b	coord: 603..703 e-value: 7.1E-50 score: 181.7
IPR013194	Histone deacetylase interacting domain	PFAM	PF08295	Sin3_corepress	coord: 605..699 e-value: 2.8E-37 score: 126.6
IPR031693	Sin3, C-terminal	PFAM	PF16879	Sin3a_C	coord: 941..1214 e-value: 8.0E-66 score: 222.6
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 526..570 e-value: 1.5E-6 score: 28.1 coord: 149..193 e-value: 4.1E-18 score: 65.2 coord: 332..401 e-value: 4.2E-17 score: 61.9
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 504..573 score: 11.341
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 308..404 score: 15.482
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 126..196 score: 19.826
IPR003822	Paired amphipathic helix	SUPERFAMILY	47762	PAH2 domain	coord: 510..573
IPR003822	Paired amphipathic helix	SUPERFAMILY	47762	PAH2 domain	coord: 124..195
IPR003822	Paired amphipathic helix	SUPERFAMILY	47762	PAH2 domain	coord: 305..403

Blast

[Close]

BLAST of TCONS_00056014-protein vs. Swiss-Prot (Human)
Match: SIN3A (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2)

HSP 1 Score: 1012.68 bits (2617), Expect = 0.000e+0
Identity = 562/1146 (49.04%), Postives = 740/1146 (64.57%), Query Frame = 0

Query:   88 PTHLTPQGPPAHQ-QSKPAYQTLTPNATHPPTA--AGQQQYQRLKVEDALSYLDQVKLQFGNQPQVYNEFLDIMKEFKSQTIDTPGVISRVSALFKGHPDLIVGFNTFLPPGYKIEVSLTDINTVNVCAPTGTTTHLISGSGLIAAPTQPSQKNNTTSGVAVSTSPGTSTSNSSTITTTSTTSVPKSPTASVAIALSSGVTAKT--TSPSVPPSVALPLQSPGMQSQTQAQ-HHAINYVTKIKNRFQGQPEVYQKFLDILNNYQTEQKAIKENSVDQYGRPLQEQEVFNREGKLASEVYAQVAKLFNKQEDLLKEFSQFLPDATGSSFSSGVSALSTAPIPSYQPLSKKSSSNNSSSKSMSSKPKKPIPSLQSSNSSKNNNSSNNNNNTDAMETETKGEPGGDK--HLKKRHKSALKDVTLAEAIKLGNFSEFAFFEKVRKALKSPEVYENFLRCLVLFNSEVITRSELIQLTTTFLGKFPDLFTWFKVFLGYKENQQTETNITTFKDRGTGGELAHLEIDFASCKRSGASYRAYPNTYVQPKCVGRTQLCKEVLNDTWVSLPSWSEDTQFPGTRKTQYEEYIYKCEDERFELDVVIETNLCTIKVLEGVQKKLSRMSSDDQQKFRLDNSLGGTSDIIHKKAIYRIYGDKSPEVIDGLKKTPHVVLPLVLKRLKQKDEEWRTAQKQFNKIWRDQNEKYYLKSLDHQGINFKQNDLKNIRPKSLVREIEQILEERTDQMEDGNAEI-VGPHFEFSYPDASLLEDATALIIHHMKRQTGIHKEDKTKIKSILLIFLQEMFFASPGELS--DDEQDADEEMPDATAPSVKSPESTNTPSKSSSKDKEAVLSPSTLIKEENADDFYNLFFVNNTWYILLRLHQMLCERLLKMYKQAMKVASFEARD----------KKYRHEGTAEALRLKKPAVTDVEDFYPAFQDMVKNLLDGQLETNQYEDTLRETFGVNSFVAFTMDKLIQNIVRQLHSLVTDETSLKLMDIFKQEKKNKAAGGPSVTATARTPFELSYQKKVENLLVDENCYKIYLHKNKTSCKVTFELLPTEDDQSEDQNEIEKWSDYIEKYIGSSEIVTELRDHLLKKPIFLLRNARVIRKRVEDAQNEKESNTIDEKESKEKNEEENEKPVE 1212
            PT + P G    Q  + PA          PP A   GQQQ+QRLKVEDALSYLDQVKLQFG+QPQVYN+FLDIMKEFKSQ+IDTPGVISRVS LFKGHPDLI+GFNTFLPPGYKIEV   D+  VNV  P     H I   G+   P  P Q  +  S  +       +        +  +     +P +     L    + ++    P  P +++L   +P +Q+    + +HAINYV KIKNRFQGQP++Y+ FL+IL+ YQ EQ+  KE   + Y   L EQEV           YAQVA+LF  QEDLL EF QFLPDA  S   S  +A     +       +           +++KP++P         S+N               + +  P G      KK     LKD ++A+A K G  +E  FF+KVRKAL+S E YENFLRCLV+FN EVI+R+EL+QL + FLGKFP+LF WFK FLGYKE+   ET     K+R T G    +EID+ASCKR G+SYRA P +Y QPKC GRT LCKEVLNDTWVS PSWSED+ F  ++KTQYEE+IY+CEDERFELDVV+ETNL TI+VLE +QKKLSR+S+++Q KFRLDN+LGGTS++IH+KA+ RIY DK+ ++IDGL+K P + +P+VLKRLK K+EEWR AQ+ FNK+WR+QNEKYYLKSLDHQGINFKQND K +R KSL+ EIE I +ER +Q  + NA + VGPH   +Y D  +LEDA ALIIHH+KRQTGI KEDK KIK I+  F+ ++ FA  G+LS  ++E++ + ++ +AT    K      +P KS     + + S +   K    D+ YNLF+VNN WYI +RLHQ+LC RLL++  QA +    E R+          K+ + +  A  LRLK+P   DVED+YPAF DMV++LLDG ++++QYED+LRE F +++++AFTMDKLIQ+IVRQL  +V+DE  +++ D++  E  N A GG   T  +R+  E +YQ+K E L+ DENC+K+   +++   ++T ELL TE++ S+D  E E+WSDY+E+Y+ S     ELR+HL +KP+FL RN R IRK     Q  +E     EKE KE N ++  + V+
Sbjct:   88 PTAVQPHGGQVVQSHAHPA----------PPVAPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDM--VNVTTPG--QVHQIPTHGIQPQPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLGT-APSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGN-YTPALTEQEV-----------YAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKVDSV-------RNDHGGTVKKPQLNNKPQRP---------SQNG-------------CQIRRHPTGTTPPVKKKPKLLNLKDSSMADASKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKESVHLETYP---KERATEG--IAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVGPHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLLFAQRGDLSDVEEEEEEEMDVDEATGAVKKHNGVGGSPPKS-----KLLFSNTAAQKLRGMDEVYNLFYVNNNWYIFMRLHQILCLRLLRICSQAERQIEEENREREWEREVLGIKRDKSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLAENNNGATGGQLNTQNSRSLLESTYQRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLAQKPVFLPRNLRRIRK----CQRGREQQ---EKEGKEGNSKKTMENVD 1160

HSP 2 Score: 82.8037 bits (203), Expect = 9.996e-16
Identity = 34/103 (33.01%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 1287 LGCKISMNSYKIKYVSGTSDFMYRKNSSSKSQKSHPKINMKLHNQFESQHSSWLHENTTRDQCHQAEEWLLGKAQTENFLPCLTTKDSGRVGGLMVNKYSVVY 1389
            L C+  +NSYK+ YV  + D+MYR+ +  ++ +SH +++ +LH +F++    W  E+  R+   +  +WL+G+   E  +PC TT D+  +  + +NKY V Y
Sbjct: 1165 LECRFKLNSYKMVYVIKSEDYMYRRTALLRAHQSHERVSKRLHQRFQAWVDKWTKEHVPREMAAETSKWLMGEG-LEGLVPCTTTCDTETLHFVSINKYRVKY 1266

The following BLAST results are available for this feature:

BLAST of TCONS_00056014-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056014-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SIN3A	9.996e-16	49.04	Paired amphipathic helix protein Sin3a OS=Homo sap...	[more]

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TCONS_00056014-protein (polypeptide) - C. hemisphaerica