TCONS_00056028-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056028-protein
Unique NameTCONS_00056028-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056028-protein ID=TCONS_00056028-protein|Name=TCONS_00056028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp
MSQNRSNLSERTRLLQDTTSGESEDEFSVPTAQILDPNSTGRMDVVQSDN
PDGAANVPPPAPPAQNDTEQDEMDEEMLQYGAKSVLMLIVPVSVCLLVVV
TTISSVTYYTTNQGTYLIYTPFHEEGPISSGEKFGQALANALIVIGVILG
MTIFLVLLYKYRCYMIIEGWLVISSLMLLFFFTFIYLQELLRVYNIPMDY
MSVALLIWNVGCVGLICIHWKGPLILQQAYLILISALMALVFIKYLPDWT
LWFILAAVALYDLFAVLCPKGPLRMLVNLAQERNEQLFPSLVYSSTVMYL
INTVTDDEAQGTTASSPVEDSERQSGMNSPPARYSEQPTLLTQPGEVEIV
SPSSPPVQSPSSEGGHANSGFTTSPSLDDHARHQEAAQSLNGDHSTPPTN
TRQQQQGQQPSLNTNQVQMEEEEQEERGVKLGLGDFIFYSVLVGKASANK
DWNTTIACFFAILIGLCLTLLLLAIHRKALPALPISIFFGLLFNFATQYL
VRPYAETLSVNQVFI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035253XLOC_035253Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056028TCONS_00056028Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001108Peptidase_A22A
IPR006639Preselin/SPP
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016485protein processing
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016485 protein processing
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004190 aspartic-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001108Peptidase A22A, presenilinPRINTSPR01072PRESENILINcoord: 288..295
score: 73.68
coord: 245..252
score: 70.39
coord: 262..279
score: 78.07
coord: 89..99
score: 56.94
IPR001108Peptidase A22A, presenilinPFAMPF01080Presenilincoord: 80..504
e-value: 4.0E-156
score: 519.7
IPR006639Presenilin/signal peptide peptidaseSMARTSM00730psh_8coord: 135..501
e-value: 5.7E-123
score: 424.5
NoneNo IPR availableGENE3D1.10.287.70coord: 67..484
e-value: 9.1E-4
score: 18.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..425
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72

Blast
[Close]
BLAST of TCONS_00056028-protein vs. Swiss-Prot (Human)
Match: PSN1 (Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 1.211e-126
Identity = 236/440 (53.64%), Postives = 300/440 (68.18%), Query Frame = 0 
Query:   78 LQYGAKSVLMLIVPVSVCLLVVVTTISSVTYYTTNQGTYLIYTPFHEEGPISSGEKFGQALANALIVIGVILGMTIFLVLLYKYRCYMIIEGWLVISSLMLLFFFTFIYLQELLRVYNIPMDYMSVALLIWNVGCVGLICIHWKGPLILQQAYLILISALMALVFIKYLPDWTLWFILAAVALYDLFAVLCPKGPLRMLVNLAQERNEQLFPSLVYSSTVMYLINTVTDDEAQGTTASSPVEDSERQSGMNSPPARYSEQPTLLTQPGEVEIVSPSSPPVQSPSSEGGHANSGFTTSPSLDDHARHQEAAQSLNGDHSTPPTNTRQQQQGQQPSLNTNQVQMEEEEQEERGVKLGLGDFIFYSVLVGKAS--ANKDWNTTIACFFAILIGLCLTLLLLAIHRKALPALPISIFFGLLFNFATQYLVRPYAETLSVNQVFI 515
            L+YGAK V+ML VPV++C++VVV TI SV++YT   G  LIYTPF E+   + G++   ++ NA I+I VI+ MTI LV+LYKYRCY +I  WL+ISSL+LLFFF+FIYL E+ + YN+ +DY++VALLIWN G VG+I IHWKGPL LQQAYLI+ISALMALVFIKYLP+WT W ILA +++YDL AVLCPKGPLRMLV  AQERNE LFP+L+YSST+++L+N    D            +++R+   NS   +Y+ + T              S    + + +GG +          D H           G H + P  +R   Q    S+      +  E+ EERGVKLGLGDFIFYSVLVGKAS  A+ DWNTTIACF AILIGLCLTLLLLAI +KALPALPISI FGL+F FAT YLV+P+ + L+ +Q +I
Sbjct:   75 LKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQ-LIYTPFTEDTE-TVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGD-----------PEAQRRVSKNS---KYNAEST-----------ERESQDTVAENDDGGFSEEW---EAQRDSHL----------GPHRSTP-ESRAAVQELSSSI------LAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
The following BLAST results are available for this feature:
BLAST of TCONS_00056028-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSN11.211e-12653.64Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1[more]
back to top