TCONS_00056049-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056049-protein
Unique NameTCONS_00056049-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056049-protein ID=TCONS_00056049-protein|Name=TCONS_00056049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
KKFKIMLSNLVNYSDSENEDEINSNENQNGVEKQQKQFNSYSEEQKDRGI
ISSESEEHETTRERRKSETNSETAHKKVKKKSTLPLPSSIGRMFGGSKNE
NENSVTKHQGRKRTFEHVEGNWASYIFIPLIETNNVLLLYEKVIKLLKTD
GRINVKLHSFQPKDCHLTLSRTVSVRHYWMDSMYMLLKEKFDSHSKFFFS
ISGLEVYTNDDESRTFVSLKVDTSDSLLKAVTKVDQVFKEFNLPLYYTEP
SFHISIAWFLGDRKTMLDQIIGENVEKLFLEFHGGLDANIAEKVCVKFGH
KLQQIELK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035273XLOC_035273Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056049TCONS_00056049Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1
Vocabulary: Biological Process
TermDefinition
GO:0034477U6 snRNA 3'-end processing
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034477 U6 snRNA 3'-end processing
molecular_function GO:0004518 nuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase Usb1PFAMPF09749HVSLcoord: 85..305
e-value: 4.0E-50
score: 170.4
IPR027521U6 snRNA phosphodiesterase Usb1HAMAPMF_03040USB1coord: 9..308
score: 25.335
NoneNo IPR availableGENE3D3.90.1140.10coord: 124..298
e-value: 2.5E-5
score: 23.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..111

Blast
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BLAST of TCONS_00056049-protein vs. Swiss-Prot (Human)
Match: USB1 (U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.831e-41
Identity = 80/235 (34.04%), Postives = 136/235 (57.87%), Query Frame = 0 
Query:   80 KKSTLPLPSSIGRMFGGSKNENENSVTKHQGRKRTFEHVEGNWASYIFIPLIETNNVLLLYEKVIKLLKTDGRINVKLHSFQPKDCHLTLSRTVSVRHYWMDSMYMLLKEKFDSHSKFFFSISGLEVYTNDDESRTFVSLKVDTSDS-LLKAVTKVDQVFKEFNLPLYYTEPSFHISIAWFLGDRKTMLDQIIGENVEKLFLEFHGGLDANI-----AEKVCVKFGHKLQQIELK 308
             +   P+P S+  MF G++   E+  TKH GR RTF H  GNWA+++++P       L L + ++   +T     V++  F     HL+LS++V +RH+W+      LK +  S  +FFF+ + +++YTN +++RTF+ L+V +  +  L  V++VD+V +EFNL  +Y +PSFH+S+AW +GD +  L+   G+ +++L     G  DA +      E+V  K G+K   + LK
Sbjct:   39 PRQRFPVPDSVLNMFPGTEEGPEDDSTKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVF-----HLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLE---GQCLQELQAIVDGFEDAEVLLRVHTEQVRCKSGNKFFSMPLK 265
The following BLAST results are available for this feature:
BLAST of TCONS_00056049-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USB11.831e-4134.04U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1... [more]
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