TCONS_00056151-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056151-protein
Unique Name	TCONS_00056151-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	360

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056151-protein ID=TCONS_00056151-protein|Name=TCONS_00056151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
KMPFKGETWIKTQTGWRTIRTIVINNKQQRIPLVTSPYSSDSEDEVIART
QHVCGIYWECGPPFVILPGECRKTSYLISRNSQTQCTIKSPPVVYIFNKL
SFKQSLRNPRRFNYVTNMLEIVLKQDFVSTCSSSQKKLLTLFEQLVNTVL
STEINVHIAKNLVSLYKEKHLKNKGTFKRQKLWNTVLNKISSIERRLHRF
HVKKICRGTRNSSNIHLTDLPSVVLHYLFRCFSDHQDIVALACVNQQFNR
LSKDPGLWKNMCLYHLPPSKLVGIDPNIPSSWKNTYKTCIKRTTMRHSFA
DLLIICSDCHFVCWKGTHLCTLQQQQQQQQQQQNSNENISKKPPIAIPIT
PKGFCHLFER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035351	XLOC_035351	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056151	TCONS_00056151	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 322..342
None	No IPR available	GENE3D	1.20.1280.50		coord: 216..343 e-value: 2.6E-9 score: 36.9
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 214..261 score: 9.047
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 211..289

Blast

[Close]

BLAST of TCONS_00056151-protein vs. Swiss-Prot (Human)
Match: FBX25 (F-box only protein 25 OS=Homo sapiens GN=FBXO25 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 3.440e-21
Identity = 89/395 (22.53%), Postives = 156/395 (39.49%), Query Frame = 0

Query:    2 MPFKGE-------TWIKTQTGWRTIRTIV--INNKQQRIPLVTSPYSSDSEDEVIARTQHVCGIYWECGPPFVILPGECRKTSYLISRNSQTQCTIKSPPVVYI-----------------FNKLSFKQSLRNPRRFNYVTNMLEIVLKQDFVSTCSSSQKKLLTLFEQLVNTVLSTEINVHIAKNLV-SLYKEKHLKNKGTFKRQ-----KLWNTVLNKISSIERRLHRFHVKKICRGTRNSSNIHLTDLPSVVLHYLFRCFSDHQDIVALACVNQQFNRLSKDPGLWKNMCLYHLPPSKL---VGIDPNIPSSWKNTYKTCIKRTTMRHSFADLLIICSDCHFVCWKGTHLCTLQQQQQQQQQQQNSNENISKKPPIA--IPITPKGFCHLFE 359
            MPF G+       +WIKT+ GW+   +    +  +  R  +  S   +  + E+    +H                 + RK  +   RN     +      +Y+                 FN+L F  ++++ RRFNYV  +L+++ K    S    +QK    + +++V  VL    N  + K+L+  L     +  +G  K        +W   L  I + +++L    + K     + ++ + L+DLP  +L+ +   FSD  DI+ L  V      LS+D  LWK +C YH    +    + +       WK  Y    K    +  + D L  C  C  + WK  HL  L          ++S    +   P +   P++P+ F  LF+
Sbjct:    1 MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHE-------------YASKKRKKDHF--RNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTK-----QVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALL---------FKDSGHPCTAADPDSCFTPVSPQHFIDLFK 366

The following BLAST results are available for this feature:

BLAST of TCONS_00056151-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056151-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBX25	3.440e-21	22.53	F-box only protein 25 OS=Homo sapiens GN=FBXO25 PE...	[more]

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TCONS_00056151-protein (polypeptide) - C. hemisphaerica