Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00056271-protein ID=TCONS_00056271-protein|Name=TCONS_00056271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp TAELTLKDNLTNNLMCIDSASTPVNNIINKGDSRDHSTEWKTTEFVFPPK ALKGIKISTQNRLIEDFQYLIEGESSEDSMLIIIPQIVSCEKGELEIFVA NPLKEEVGALLSIVATPITTVEEPKFAPKEKCYKPYPLSPDEKEELDKLL DEFKDVLADKTDPLGHTDRVEHEIITEHDQPIRQKCYRLSPAQKETLEKE IEHQLEKKIIRRSNSPYSHPVVLVPKPCGGTRVCIDYRKLNKITVKDAHP LPKIEEILDHLNGAKIFSTIDLLMGYHQIPMKPESIPKTAFVTHKGLFEY VMMHMGLCNSAASFERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQ LRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIK SFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEE MKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQEVSGRF VPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYLYGRAFVVYTDHQ PLKNMVNAHDPTGRLS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR000477 RT_dom
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 Expect = 2.9E-23 / Score = 82.5 Score = 12.668 Expect = 2.4E-23 / Score = 81.7 Expect = 3.4E-38 / Score = 129.9 Expect = 1.3E-38 / Score = 131.2 Expect = 8.69609E-32 / Score = 117.979 Expect = 2.19075E-81 / Score = 254.057 Score = Sequence PF00078 PS50878 G3DSA:3.30.70.270 G3DSA:3.10.10.10 G3DSA:3.30.70.270 cd09274 cd01647 SSF56672
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000477 Reverse transcriptase domain PFAM PF00078 RVT_1 coord: 224..384 e-value: 2.9E-23 score: 82.5
IPR000477 Reverse transcriptase domain PROSITE PS50878 RT_POL coord: 205..384 score: 12.668
None No IPR available GENE3D 3.30.70.270 coord: 298..390 e-value: 2.4E-23 score: 81.7
None No IPR available GENE3D 3.10.10.10 coord: 170..297 e-value: 3.4E-38 score: 129.9
None No IPR available GENE3D 3.30.70.270 coord: 391..516 e-value: 1.3E-38 score: 131.2
None No IPR available CDD cd09274 RNase_HI_RT_Ty3 coord: 478..565 e-value: 8.69609E-32 score: 117.979
None No IPR available CDD cd01647 RT_LTR coord: 208..384 e-value: 2.19075E-81 score: 254.057
None No IPR available SUPERFAMILY 56672 DNA/RNA polymerases coord: 149..561
Blast
BLAST of TCONS_00056271-protein vs. Swiss-Prot (Human)
Match:
RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)
HSP 1 Score: 91.6633 bits (226), Expect = 3.657e-19
Identity = 86/344 (25.00%), Postives = 145/344 (42.15%), Query Frame = 0
Query: 213 SNSPYSHPVVLVPKPCGG-----TRVCIDYRKLNKITVKDAHPLPKIEEILDHLNGAKIFSTIDL--------LMGYHQIPMKPESIPKTAFVTHKGL-FEYVMMHMGLCNSAASF--ERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQLRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIKSFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEEMKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQ--EVSGRFVPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYL 538
S + Y P +P G R+ +Y L + + I E+ D L+GA+ F+ ++L + G+ + E + K AF GL E + + S + + + L F+L Y +++IYS + EEHL +R VL R R + + L K +F + FLG V +G+ T I + P S+ LR+F+ YR F+ + IA L L +F E + F+ LK PLLH+P + F + T + A+ + Q + +G+ + R + E+ Y+ +E + L + A +YL
Sbjct: 604 SETFYECPSTAPWEPVGARMQERARLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGH-----RTEDVWKAAF----GLELEEMKSYQPFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYL 938
The following BLAST results are available for this feature:
BLAST of TCONS_00056271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
T A E L T L K D N L T N N L M C I D S A S T P V N N I I N K G D S R D H S T E W K T T E F V F P P K A L K G I K I S T Q N R L I E D F Q Y L I E G E S S E D S M L I I I P Q I V S C E K G E L E I F V A N P L K E E V G A L L S I V A T P I T T V E E P K F A P K E K C Y K P Y P L S P D E K E E L D K L L D E F K D V L A D K T D P L G H T D R V E H E I I T E H D Q P I R Q K C Y R L S P A Q K E T L E K E I E H Q L E K K I I R R S N S P Y S H P V V L V P K P C G G T R V C I D Y R K L N K I T V K D A H P L P K I E E I L D H L N G A K I F S T I D L L M G Y H Q I P M K P E S I P K T A F V T H K G L F E Y V M M H M G L C N S A A S F E R L A E Q V F A L E L W I F L L F Y I D D L I I Y S K T P E E H L Q Q L R V V L T R L R E N K L Q A K L S K C R F A M A Q L T F L G H T V N A E G I L P Q D T N T T T I K S F Q Y P K S Q K E L R S F L G M C S Y Y R K F I P N Y G K I A R S L N T L L K K D A K F Q L T E E M K M D F D T L K E K L V S P P L L H Y P D Y E R I F I V V T D A S K Y A I G H I I A Q E V S G R F V P I K Y G G R T L K A A E I N Y T I S E K E A L A L V H A I Q K N H Q Y L Y G R A F V V Y T D H Q P L K N M V N A H D P T G R L S 50 100 150 200 250 300 350 400 450 500 550 Expect = 3.66e-19 / Id = 25.00 Sequence RTL1
Match Name E-value Identity Description
RTL1 3.657e-19 25.00 Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
back to top