TCONS_00056271-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056271-protein
Unique NameTCONS_00056271-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056271-protein ID=TCONS_00056271-protein|Name=TCONS_00056271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
TAELTLKDNLTNNLMCIDSASTPVNNIINKGDSRDHSTEWKTTEFVFPPK
ALKGIKISTQNRLIEDFQYLIEGESSEDSMLIIIPQIVSCEKGELEIFVA
NPLKEEVGALLSIVATPITTVEEPKFAPKEKCYKPYPLSPDEKEELDKLL
DEFKDVLADKTDPLGHTDRVEHEIITEHDQPIRQKCYRLSPAQKETLEKE
IEHQLEKKIIRRSNSPYSHPVVLVPKPCGGTRVCIDYRKLNKITVKDAHP
LPKIEEILDHLNGAKIFSTIDLLMGYHQIPMKPESIPKTAFVTHKGLFEY
VMMHMGLCNSAASFERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQ
LRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIK
SFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEE
MKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQEVSGRF
VPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYLYGRAFVVYTDHQ
PLKNMVNAHDPTGRLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035445XLOC_035445Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056271TCONS_00056271Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500550Expect = 2.9E-23 / Score = 82.5Score = 12.668Score = SequencePF00078PS50878G3DSA:3.30.70.270G3DSA:3.10.10.10G3DSA:3.30.70.270cd09274cd01647SSF56672
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 224..384
e-value: 2.9E-23
score: 82.5
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 205..384
score: 12.668
NoneNo IPR availableGENE3D3.30.70.270coord: 298..390
e-value: 2.4E-23
score: 81.7
NoneNo IPR availableGENE3D3.10.10.10coord: 170..297
e-value: 3.4E-38
score: 129.9
NoneNo IPR availableGENE3D3.30.70.270coord: 391..516
e-value: 1.3E-38
score: 131.2
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 478..565
e-value: 8.69609E-32
score: 117.979
NoneNo IPR availableCDDcd01647RT_LTRcoord: 208..384
e-value: 2.19075E-81
score: 254.057
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 149..561

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
TAELTLKDNLTNNLMCIDSASTPVNNIINKGDSRDHSTEWKTTEFVFPPKALKGIKISTQNRLIEDFQYLIEGESSEDSMLIIIPQIVSCEKGELEIFVANPLKEEVGALLSIVATPITTVEEPKFAPKEKCYKPYPLSPDEKEELDKLLDEFKDVLADKTDPLGHTDRVEHEIITEHDQPIRQKCYRLSPAQKETLEKEIEHQLEKKIIRRSNSPYSHPVVLVPKPCGGTRVCIDYRKLNKITVKDAHPLPKIEEILDHLNGAKIFSTIDLLMGYHQIPMKPESIPKTAFVTHKGLFEYVMMHMGLCNSAASFERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQLRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIKSFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEEMKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQEVSGRFVPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYLYGRAFVVYTDHQPLKNMVNAHDPTGRLS50100150200250300350400450500550Expect = 3.66e-19 / Id = 25.00SequenceRTL1
Match NameE-valueIdentityDescription
RTL13.657e-1925.00Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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