TCONS_00056285-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056285-protein
Unique NameTCONS_00056285-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056285-protein ID=TCONS_00056285-protein|Name=TCONS_00056285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
SGKNLENKYIHSIMNSLTITLQIIFLLQIFTETSSSSFECTNRFEYRHML
KSKVPQWGNCTYIVNHFPMCKPEVEVWYRHLPPYVDKQNESQVHGLIPEM
LRQVYETCCMGCTKINFKNSDDVIDILFKPNLTLGMPFESALGSKKISGK
HYVNFLQSHNTVFLAREMQNLSIELSKNLFLSVIKTWPLLLIAFLMAVIA
GCIVWFLDMWFNKDEFPSHFPRGPFEGFWWAFVSMTTVGYGDRAPKSIVA
RFFAVIWILFGITIFSMYTASLTTALSKSVDDLIIPTMAGKKIGVLATTA
LGKSAAIMEGADIITFPTIERLIDALKHDDVEAIAMDEYLAEYMLTHFES
RVSKIRKHHGLQIDGNSYGVVTDDAGMKEMLDSFFQTNEDNRETMIHEIM
KENYMKFSKLQKNKIDSQNIHSADSPLFLITVVTLVLVGIATIVLGFFCK
WFVKHHHQHVPDFIKSRMVYRKEMFNPDMEALNKVDLDNNSIETTTDSIE
MGKLAKDVNDLKIQFDKLQKRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035458XLOC_035458Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056285TCONS_00056285Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001638Solute-binding_3/MltF_N
IPR001320Iontro_rcpt
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 501..521
NoneNo IPR availableGENE3D3.40.190.10coord: 280..357
e-value: 8.2E-7
score: 28.7
NoneNo IPR availableGENE3D1.10.287.70coord: 169..279
e-value: 3.2E-21
score: 74.5
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 287..385
coord: 73..172
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 184..278
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 267..387
e-value: 9.6E-8
score: 31.6
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 194..277
e-value: 1.1E-8
score: 34.9
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 198..277
e-value: 3.7E-14
score: 52.4

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056285-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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