TCONS_00056294-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056294-protein
Unique NameTCONS_00056294-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056294-protein ID=TCONS_00056294-protein|Name=TCONS_00056294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MCDVTKENFNRIFPTIEWSIRNSEFIAIDGEFTGLSTSNTFEPTLFDTPK
ERYAKLKRSLSKFTLCQLGLACFVRSTKIENSYDTYVFNIYSCPASFGSI
DSKFTCQASALKFLTEHHFDFNKFVKEGVPYLNRDQRVVLYEHHKAGMAI
PSMLLKQIDDKYVKPIIKLIEEFLVSDLKNDHLELPYIPNGIELYVVLRS
IEKRFTNLECSFNEDDKIAITRVLDEKQKVVFEPLYEKILQDTVGVSRVL
DLIAECKKPLIGHNFLGDLIMIYERFFHRLPQDYHQFKKRIHDNFHQIFD
TKHIANNLRREFRDLNFPDFTNLQDLFTYFSRSEGFHHRIYTPKFILNDI
CKKYESGDHPHEAGFDAYSTGFIFLRMAHLLATKNIKLTDEKPLDLTDHF
YVLKIFVDGINMSRAAVRHVNLNGDDPPSTLPERFIVRSRKKKKPLSANQ
FSFVFMMVDEYLTKIKPK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035461XLOC_035461Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056294TCONS_00056294Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR006941RNase_CAF1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..395
e-value: 1.4E-73
score: 246.8
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 2..133
coord: 243..388
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 4..374
e-value: 3.1E-78
score: 263.1

Blast
[Close]
BLAST of TCONS_00056294-protein vs. Swiss-Prot (Human)
Match: PNDC1 (Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapiens GN=PNLDC1 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.643e-61
Identity = 128/425 (30.12%), Postives = 225/425 (52.94%), Query Frame = 0 
Query:   27 AIDGEFTGLST--SNTFEPTLFDTPKERYAKLKRSLSKFTLCQLGLACFVRSTKIENSYDTYVFNIYSCPASFGSIDSKFTCQASALKFLTEHHFDFNKFVKEGVPYLNRDQRVVLYEHHKAGMAIPSMLLKQIDDK-YVKPIIKLIEEFLVSDLKNDHLELPYIPNGIELYVVLRSIEKRFTNLECSFNEDDKIAITRVLDEKQKVV------FEPLY-EKILQDTVGVSRVLDLIAECKKPLIGHNFLGDLIMIYERFFHRLPQDYHQFKKRIHDNFHQIFDTKHIANNLRREFRDLNFPDFTNLQDLFTYFSRSEGFHHRIYTPKFILNDICKKYESGDHPHEAGFDAYSTGFIFLRMAHLLATKNIKLTDEKPLDLTDHFYVLKIFVDGINMSRAAVRHVNLNGDDPPSTLPERFIVRSRK 441
             +D EFTGL +  S   + +LFD P E Y K ++S+ +FT+CQ+GL+ F       N Y  +  N Y  P +FG +DS+F+ QAS+++FL ++ F++NKF+K G+PY+N +Q   +      G    +  ++   DK  +K +I  +  +L    + D + LP I  G + + V   + +   N+     +D+ + + +V  + +  +       E  + E IL    G S    ++ + +KPL+GHN + DL+ ++E+FF  LP+ Y QFK+ IH  F  + DTK +  ++   ++++NFP  +NL +++   + S+    +   P+ +    C+KY     PHEA +DA+  G + L++AHLL  K   +          +  VL  +V+ +N+ RA V  +N +G D PS  P   I+  ++
Sbjct:   15 GLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPTTFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTG----NWRVRSSPDKDQIKVVIDEVTRWLELAKEGDWMTLPGI-TGFQAFEVQLVLRQALPNIWTVL-KDEGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI---WKEMNFPRVSNLSEVYEVLN-SDLNPTKNSGPEIVHASRCEKYVETKCPHEAAYDAFLCGSVLLKVAHLLLQKIYHIDPVPESSFPQYLDVLAPYVNQVNLIRAGVPKINFSGPDYPSIRPPILILSVKR 429
The following BLAST results are available for this feature:
BLAST of TCONS_00056294-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PNDC12.643e-6130.12Poly(A)-specific ribonuclease PNLDC1 OS=Homo sapie... [more]
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