TCONS_00056319-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056319-protein
Unique NameTCONS_00056319-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056319-protein ID=TCONS_00056319-protein|Name=TCONS_00056319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=798bp
MATAVTADEYKTKYEALVLEKNQMERDFGQKRAQFRQLYLDVEGKLKNEK
EVVKQLEIQTKDLTKKNEDLKSENEGIRIAAQLSSEEQSQSMINSHQEEI
ASLQHIYQEHAKENQARLANQYEDERNKLIETIKQLENKLKNNDNKTLDS
TIASLVENQEQQSLMSSLSNTFIKKVSSAGPPPKLKQDGTTTTKDQSLDV
SQQLVQKDVDAWKSILAPLELEIQSLKSQLEEAKKNTQTTTITEQEMQEM
KKVVDSERSARTDLEMYVAVLNTQKGVLQEDTDKLKRELHNVCRLFEQEK
MSHGELKQTWKLANEQFLDQQTKLSFELDYTKKLLTPQQLEQVSKEVRQF
KASQPSAQQTPKLNTTPKTKSRNELLGDFDPLGKKSNSKETLAQKASRSP
ATKKSDIKQPSMGESFFNALFPAASQAKQFNEYMQDMATTEKPLVLSSSS
DSDSEDDLNRAIRAQNKQRYQQHHVVVDETGQEVIEDDKATPPRPQPLTP
PPQSTTDVVDVADGGLLDENKKPLKKSNSSGDILSPTRQMLSADNSLHEK
SLSQGDVSFNSTNRSLLTDEVDSKLSLNETGWSTMSSDNYYNNTCMMCQN
YEKQLQLVQKDLLDVKHNETLLVTNLKTLQSDLDSEKEKFSSLERSIESV
DVDTKSQINIYKTNQQEVDKQVTLLHSQFKRFQDDIVKEIKAMSEERDRA
LAEVAQNQNTSGEELSFEREEELKTEIMFLKDRMMAEQVDKEAIESVLQG
DLKDARDQIVYLQQEVQTLRNGGNPHSRQQQQQQAARSQDEDPPLLTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035479XLOC_035479Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056319TCONS_00056319Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003914Rabaptin
IPR018514Rabaptin_coiled-coil
IPR015390Rabaptin_Rab5-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005096GTPase activator activity
GO:0008083growth factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006897endocytosis
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006897 endocytosis
molecular_function GO:0008083 growth factor activity
molecular_function GO:0005096 GTPase activator activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 626..646
NoneNo IPR availableCOILSCoilCoilcoord: 598..618
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
NoneNo IPR availableCOILSCoilCoilcoord: 93..146
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableCOILSCoilCoilcoord: 690..710
NoneNo IPR availableCOILSCoilCoilcoord: 752..772
NoneNo IPR availableCOILSCoilCoilcoord: 39..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..536
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 766..798
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..409
IPR003914RabaptinPRINTSPR01432RABAPTINcoord: 209..227
score: 36.84
coord: 686..708
score: 13.04
coord: 260..281
score: 90.91
IPR018514Rabaptin coiled-coil domainPFAMPF03528Rabaptincoord: 192..354
e-value: 1.2E-37
score: 129.7
coord: 20..129
e-value: 5.6E-8
score: 31.8
IPR015390Rabaptin, GTPase-Rab5 binding domainPFAMPF09311Rab5-bindcoord: 595..704
e-value: 9.9E-8
score: 31.6

Blast
[Close]
BLAST of TCONS_00056319-protein vs. Swiss-Prot (Human)
Match: RABE1 (Rab GTPase-binding effector protein 1 OS=Homo sapiens GN=RABEP1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.346e-34
Identity = 104/325 (32.00%), Postives = 174/325 (53.54%), Query Frame = 0 
Query:   23 QMERDFGQKRAQFRQLYLDVEGKLKNEKEVVKQLEIQTKDLTKKNEDLKSENEGIRIAAQLSSEEQSQSMINS----HQEEIASLQHIYQEHAKENQARLANQYEDERNKLIETIKQLENKLKNNDNKTLDSTIASLVENQEQQSLMSSLSNTFIKKVSSAGPPPKLKQDGTTTTKDQSLDVSQQLVQKDVDAWKSILAPLELEIQSLKSQLEEAKKNTQTTTITEQEMQEMKKVVDSERSARTDLEMYVAVLNTQKGVLQEDTDKLKRELHNVCRLFEQEKMSHGELKQTWKLANEQFLDQQTKLSFELDYTKKLLTPQQLEQV 343
            Q+E++F QKRA+F++LYL  E  LK +  V++  +     L  +  + ++E E I+  A +S E   Q  I+      +EE+ASLQ + +E  ++ + +   + E ER +  +  +  E ++ +   +        L E QE+++L + +                                     Q+D +  +S++ P+E EI +LK +L EA+   +    ++  ++E+   +++E+S RTDLEMYVAVLNTQK VLQED +KL++ELH VC L EQE+  H +LK TW+ AN+QFL+ Q  L  ++   + +LT +QL QV
Sbjct:   34 QLEQEFNQKRAKFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVS-ENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERTQWAQYRESAEREIADLRRR--------LSEGQEEENLENEMKKA----------------------------------QEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASK--VKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQV 313
The following BLAST results are available for this feature:
BLAST of TCONS_00056319-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RABE11.346e-3432.00Rab GTPase-binding effector protein 1 OS=Homo sapi... [more]
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