TCONS_00056364-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056364-protein
Unique NameTCONS_00056364-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056364-protein ID=TCONS_00056364-protein|Name=TCONS_00056364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MSYHCIVIGCRNGSYKLKKWKKVNINHVEEPPFQLFPVPTLKKHPEKRSI
WRRNINRLAPGSKTKLLDPSKDARVCSEHFVDGRPTEQHPYPTKNMGYDF
EKRSKRFNSESLPSSSSSLLPTCTKRRKSSLDLSEKHQPDPELKTPKTNN
SKQQTQLMTFLSKLSPKQNLVKGKADDEKTTANCSQQPIDQPATTSNSEC
HDADADATAVDFDVFISLDDEDADXYQPATTSNSECHDADADVTAVDFDV
FISLDDEDADLSSPPRQLSPKQN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035512XLOC_035512Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056364TCONS_00056364Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006612Znf_C2CH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
20406080100120140160180200220240260Expect = 0.0083 / Score = 23.1Expect = 3.0E-8 / Score = 34.4Score = 14.035Score = SequenceSM00980PF05485PS50950SSF57716
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006612Zinc finger, C2CH-typeSMARTSM00980THAP_2coord: 3..101
e-value: 0.0083
score: 23.1
IPR006612Zinc finger, C2CH-typePFAMPF05485THAPcoord: 5..114
e-value: 3.0E-8
score: 34.4
IPR006612Zinc finger, C2CH-typePROSITEPS50950ZF_THAPcoord: 1..95
score: 14.035
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 1..88

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056364-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20406080100120140160180200220240260Sequence
Match NameE-valueIdentityDescription
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