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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00056463-protein ID=TCONS_00056463-protein|Name=TCONS_00056463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1908bp
PPNKEPPIMTSQIHPDGGPLNKGQNLFEGVHTPGIMAPIESPIYGAKSEV
HDSKNENVVSLNQKQDASLEKAVSVTQNKNTSPIQMSDLSNTDEEHAVVE
VDMPTVTSEHTEPNTENFKFTENKAPNPYSATASPIAKDASTEIPLNDGV
VSVNAESSASAKSAKNTDHKPSEKQKLKAGYKDRLVSELEEVSHMLDNEE
GGNEENVDSSDIKGKLLDIDNGMFRDGDMNKVDLTGLLNEDDSTIKEEIQ
DAQNIRGVKLADKEDNGNEDFMNGESSSSGRKKDKFFQYADKKTISEKHK
KKSKKNEDDEDKELIKEILQKSHMLNDVKPNSKTPSTALHRRPASKHFSK
SPTVSVSTAKNMKKKFADKCKGKGCGLINGSTIFKEPRPTRKPVDKQNRV
EQQNKSAEDVTTKSEKNQKQEMKFKGSTLGNMKTVGRKPTKMNSLKADAS
DSGHMKTEAVSTASKMGHLVNSSSATNKDYELSVFSRGVAKLKHDVRHPT
PVVSMVQHRPDEITQFEMNALKAHNAYRHLHESPSLRLNQSMSQDANEYA
AKIARLGTLDHSKTEDGENIATVCRDKNELMTGPEASEIWYREVCDPGYD
FVSAQPGNAGHFSQVVWKGSQQFGVGRAAQMKNGLLCTYIVARYRPAGNF
LGEFKDNVKRGRFMTSRCVIYARRKNRIFRPPSTTVPALTKRSGIPKFRT
KSKRAISDFIDEPESNEHEINRDKRALKTKNAQQQKAKSYGKTSQQRSKI
DEKLTQKQTKFKGKSTQGPTTPLQDKPGRKRNLPIVKPHPSRNAHRRHYH
HHANHHQQSHYPSRNQKEKNISVLPVLVYFNKNVTTPENQVRSSMNTHQN
GSVSKDENSTIPTVSKTVGNVNQSLFQDKVPYNNTMEYNQTSKAKSDGIK
FKIIKDAPMVNLINSTRNQSTLKHLEDLPVSHSGNQTLSANKNEAVKLNE
ASPFHYQPISTARVDLPLSSMNNQTSSQFVHQNISKSSSDLEKTLKSLFQ
KNQHNFKDLEKQFVKTKPEISLRSLIAKNDSLLDRIDDFIESKLNHRTAV
IVPQSNSDRIDCLSRGDMNCSIILEDGHKLLPSEIKTSSSNREENRFDSL
SNNIGEDIRDGLSVERMREQAALNVEKDVQIDPTKLANGVRSFSNSANQI
KDNIKLANNMDAFGKSVESYQKVSQQSQAFLSRNEAAVPIARKLINQLLE
GRQNAPLNTPKDSLVRTSISSIEKNVLKEGSDIEPRLDNMDTILEMAKIG
TIALKLAKKASLEQNQPGLGDSKLWLAAAQKFEAAPQPSSSLANQPVVVE
QFFPKETEDKSSTQLVEKSIENPTTSSVTKTTTTSKPTEKHLAPDENRPK
GSSNRDDVKTKRVDDVKNDEPAFSPEDSEFIEASLNSHNVYRSVHDVNPL
LLDRSLIQHAKTRAEEFATQKLTDLSDHGGARSGEGENLAMVCVPGNERH
ANNIITGPDATRIWYNQVCSPHYVFDVDRTQEGSDQFKQIIWKDTTKLGI
ARSTFEKHGNFCTIIVARYSPPARRANSRANVPRGSFDTSYCDGLGKSSE
FIKESAQTRNAIVHESSNTQDFRLEALHLQNQFRLIHRVPQMELDDSLSV
HAEQIATQLAKEGAAKRDDILDQGENVMKSCNNNKVEVSADEAVRKWYNE
VCNPGYSFSRDDIPGGTLSFTQMIWKATKRFGIGKATSREDGMFCTYVVA
LYAEKGNVRDEYVNNIARGDFEFGYCDSLGKEHRPSYRRFQRGKIEKSSN
KTLTNTTIKSSIHTDVSKKKSSIDNRLIDDKSKISSVNLNKNTGIESVLR
PEDIVLSIKKIDTSDQDRSGSIKDKNVSTNVAGKSDIKKSKNPSKTLKND
SNSLHKQLKDKMVNFSTSKNHGGKKIIVDNLMQLNDFVMKVTKRTNTHKK
KSSGHSKT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005576 |
extracellular region |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR014044 | CAP domain | SMART | SM00198 | SCP_3 | coord: 515..652
e-value: 2.7E-14
score: 63.5
coord: 1571..1710
e-value: 2.1E-8
score: 29.9 |
| IPR014044 | CAP domain | GENE3D | 3.40.33.10 | | coord: 1535..1714
e-value: 3.7E-24
score: 85.2 |
| IPR014044 | CAP domain | GENE3D | 3.40.33.10 | | coord: 1373..1531
e-value: 1.5E-19
score: 70.2
coord: 511..663
e-value: 1.6E-23
score: 83.0 |
| IPR014044 | CAP domain | PFAM | PF00188 | CAP | coord: 1577..1700
e-value: 1.8E-9
score: 38.4
coord: 1385..1513
e-value: 1.7E-8
score: 35.2
coord: 521..633
e-value: 8.1E-8
score: 33.1 |
| IPR014044 | CAP domain | SUPERFAMILY | 55797 | PR-1-like | coord: 1567..1715 |
| IPR014044 | CAP domain | SUPERFAMILY | 55797 | PR-1-like | coord: 517..658 |
| IPR014044 | CAP domain | SUPERFAMILY | 55797 | PR-1-like | coord: 1372..1524 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1305..1374 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 155..182 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 103..133 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 682..814 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1815..1853 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 839..860 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 381..454 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 256..360 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..38 |
| IPR018244 | Allergen V5/Tpx-1-related, conserved site | PROSITE | PS01009 | CRISP_1 | coord: 610..620 |
| IPR034113 | Golgi-associated plant pathogenesis-related protein 1, SCP domain | CDD | cd05382 | SCP_GAPR-1_like | coord: 515..650
e-value: 2.97335E-46
score: 163.92 |
| IPR034113 | Golgi-associated plant pathogenesis-related protein 1, SCP domain | CDD | cd05382 | SCP_GAPR-1_like | coord: 1571..1708
e-value: 2.08776E-38
score: 141.579 |
Blast
BLAST of TCONS_00056463-protein vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 4.890e-22 Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 0
Query: 515 QFEMNALKAHNAYRHLHESPSLRLNQSMSQDANEYAAKIARLGTLDH----SKTEDGENIATVCRDKNELMTGPEASEIWYREVCDPGYDFVSAQPG---NAGHFSQVVWKGSQQFGVGRAAQMKNGLLCTYIVARYRPAGNFL--GEFKDNV 658
QF LKAHN YR H P L+L ++++++A +Y+ +A L H S+ + GEN+A D+ TG E ++ WY E+ + Y+F QPG GHF+ +VWK +++ GVG+A+ +++VARY PAGN + G F++NV
Sbjct: 8 QFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ----TGKEVADRWYSEIKN--YNF--QQPGFTSGTGHFTAMVWKNTKKMGVGKASASDG---SSFVVARYFPAGNVVNEGFFEENV 149
The following BLAST results are available for this feature:
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