TCONS_00056498-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056498-protein
Unique NameTCONS_00056498-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056498-protein ID=TCONS_00056498-protein|Name=TCONS_00056498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
MVDKYNHNLEFLEYNDERHHQHNKDPVLEQLPEELNIKSTRKDHGLYLNT
SEKEEHYPSERENHVEFHPRRYTEEDIRYSEHDLANKNHPYRKENYEEHI
SISAFVGLQKESLTKDNHAKIFEDDQSNKINGYSFKDEHSANCLSGLEHN
SKLNLSLNNNNSADKSHDQPIENNLDSAVHTPLEFPTITNGPRPKKAAPK
KRYTRTRYSNEELQVALSKCREGLSIRECSKKYGIPKSTLWDKLSCRTPA
TVLRPGRSFKVSDAVENRLVNWILKMNEDGFKVQEKQIIEAVKLFHDKSE
GVNANDNSHSKPGKAWYKNFLKRYPAAQHNLSVNHQKAEYSIEMLQAWYD
ETVDTEVPVLVESVESVQPKQPEPTTPNQIRSVLDHIEQTIGEEKLNYYR
QWKENGELSKKDPLYTAWYALAMDLDRIHNSNKNKRKRKSEQPRVNGNYV
HQHHHLENSKVEHHPLENDLIDLNSTTTTAPNVEFTENKDNRTVENNLPQ
SHYNGAYVSNESESVPPDDQLLKTC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035590XLOC_035590Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056498TCONS_00056498Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR006600HTH_CenpB_DNA-bd_dom
IPR007889HTH_Psq
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500Expect = 8.6E-7 / Score = 28.3Score = 9.9Score = Score = SequenceG3DSA:1.10.10.10PF03221PS51253PF05225mobidb-liteSSF46689
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 199..413
e-value: 8.6E-7
score: 28.3
IPR006600HTH CenpB-type DNA-binding domainPFAMPF03221HTH_Tnp_Tc5coord: 264..325
e-value: 5.0E-7
score: 29.6
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 253..330
score: 9.9
IPR007889DNA binding HTH domain, Psq-typePFAMPF05225HTH_psqcoord: 209..243
e-value: 1.3E-8
score: 34.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 480..525
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 205..255

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056498-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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