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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00056512-protein ID=TCONS_00056512-protein|Name=TCONS_00056512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp SFPAPPTIPTTPTSSSTHDSDSVEDIKVHMQLLQKSAASQFSKANKEFSK QCTNKLDQFVKDVGSVANEKEERTTQILSNIVNNTIAMKLEKTIRTEMKQ TVLAGMEKMTAKYFESLNNQVAQKISLWERTLREECAELVKSKPVAESIG YAAASILEGTIPNAYRESFQSILLPGFEKASMNMFMQINRTFQQGTKQYL ERLDKHMESKNSNQEDTQENILTNLHDLVQSFQGTADRLTTGVETNLEAL MQKQLRDATDRMQTTFGKTIESKIIPSLSRTISQSAQDSFKEFKQTIDSS INSMLSSAAVAAANSSNETFNVHKTIEEKKTYIDRLFEEGDYNTAFETAL SASDLQIVLFACGKIDPYDLFNPSSGGNTSLTQPIILSLIQQLSQNLTED TDIKTKYLEESLICIDCNEEVTRTHLPSILQTLNEQLAKTIDALSKESPP NKKQIRSLKKVQMASNGLFMS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 200..220 |
None | No IPR available | GENE3D | 1.10.220.100 | | coord: 381..466 e-value: 4.5E-17 score: 61.5 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
Blast
BLAST of TCONS_00056512-protein vs. Swiss-Prot (Human)
Match: EDC4 (Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.137e-62 Identity = 119/362 (32.87%), Postives = 215/362 (59.39%), Query Frame = 0 Query: 82 VNNTIAMKLEKTIRTEMKQTVLAGMEKMTAKYFESLNNQVAQKISLWERTLREECAELVKSKPVAESIGYAAASILEGTIPNAYRESFQSILLPGFEKASMNMFMQINRTFQQGTKQYLERLDKHMESKNSNQEDTQENILTNLHDLVQSFQGTADRLTTGVETNLEALMQKQLRDATDRMQTTFGKTIESKIIPSLSRTISQSAQDSFKEFKQTIDSSINSMLSSAAVAAANSSNETFNVHKTIEEKKTYIDRLFEEGDYNTAFETALSASDLQIVLFACGKIDPYDLFNPSSGGNTSLTQPIILSLIQQLSQNLTEDTDIKTKYLEESLICIDCNEEVTRTHLPSILQTLNEQLAKTIDA 443
+++ +A +LE++IR E+K+TV + + L+N VA K++ E +++E ++L+KSK + ++I AAA L+G + AYRE+FQS++LP FEK+ MF QIN +F+ GT++YL++L+ HM+S+ + +++ +E +L L LV + Q +++ V ++ A +Q QL A +Q + I+ + R + + KE + + SSI + SAA S+ H + ++ +I +L ++G N AF+ AL+A+DL +VL+ C +DP +F L+QP++LSLIQQL+ +L TD+K YLEE+++ +D ++ +TR H+ S++ + ++L + + A
Sbjct: 1031 LSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVAGSVRAEVQHQLHVAVGSLQES--------ILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSA------HLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPP---CPLSQPVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQA 1375
The following BLAST results are available for this feature:
BLAST of TCONS_00056512-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match Name | E-value | Identity | Description | |
EDC4 | 1.137e-62 | 32.87 | Enhancer of mRNA-decapping protein 4 OS=Homo sapie... | [more] |
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