TCONS_00056579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056579-protein
Unique NameTCONS_00056579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1418

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056579-protein ID=TCONS_00056579-protein|Name=TCONS_00056579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1418bp
LREKRKRKMPLRRGLALNITSDMVKNYFQPGTNPTQPANQVQFERHQVGM
TSFGSTRATSGVATPHFSNEEVQYYEQQMTLSNPDGHDDFFDRPVIPINE
MLLPEEDESPLAQQQEVSTEVYDNYSFEHQYDDTLPITDERQNLVQTIES
NRVTIIQGSTGSGKTTQVPQFILDYYRSHGRYCNILVTQPRRIAAISVAR
RVAEERNWPLGTLIGYQVARDRNMSEDTRVTYMTTGVLLQKLIKNKSLGE
YTHVILDEVHERDQDIDFCMLVVRKFLRNVSRHVKVILMSATVDCTLFSN
YFSILINGKQEGAPIIRVDGKMFDVSEVYFEDISGLMEPPQQNINEPEIS
FKCYQLCRELIMILDKDEVQNAQADGTMLENRGTVLCFLPGLPEIKDMHK
HLNDIEDKLKLKIIPLHSSITSHEQNKVFIPAGKYERKVILSTNIAESSI
TVPDIKYVIDFCLTKQNEVDPDTNYQRLTLQWASKASLTQRKGRAGRVSD
GHCFRMISSRMFHDLPEYCTPEMKRAPLEQVILKVKLLELGPPAMILQLA
LEPPGMADVKRTILMLKEVGALTVKQNDRINPLDGDLTFVGRVLGSLPVD
VSIGKLLLIGYAFGVLEECIVIAACLSLKSIFMQPFKQELKAYSNKMHWS
GGSGSDLIASFNAFMSWKFRKEHRGFGMPEIKWAKENFVEVRRFREIDEL
AKELRDRLTGFNILSPRNIFHSEKLNKDDELIIKLVIAGAFYPNYFQTAE
IDEADAAKQMSGRNPFTCVLVNGAPPTLVHYRSKVAQLFRNCGRGKKLFF
ENSRAFVEFENDESSPVAVAVYKAIKMRLLRLPLSIFVSKKEDEELRCNL
MENPIEAFNPETGLKTNRFNTNFNDRDGALSVTIVGDSKRVEVKDTGYIY
IFVQEVTHPGQIWVTYANPDTRTLMFQLHQKINILGGRNLKPLPKDDIYV
GGYCLALFEDEFHRAEIKMTTENGVQVFFLDFGNKAVVEPKNLKICSEAL
LETPFQAFLCELAEIRPIHGTWSEESRLRFEQLVQVGSKQLIGKIYSCIH
DTCRIELFDGDLSINRLLIEEGHAQFQEETLVSKTRHEASKNNQKSKPMP
KVAQARSTIPLDEEVLKIQLRGPFSPYELSFGGLSALSRMRATTVGQDSV
NSVVMCEEPQDKRQRLMVAQSIQINQAGSNVTVRETTLFPNIHGLNALLP
LLFAPVAEIRCDKARRKYTGALVGLGCTEKGMPILPDHDMEIVFDVAFND
EDLSAINCVRLFINMIIGIEEERIDKAHKVIEEIQSHARERLTRIVTKQR
QEMDPIYFRKEFQWNQNDPSNLLHPDSANKMLEEKPCHLYLYHKGVFFER
TGDEVDPRIEEQKRKIQHLHSLSGNSLIPFQTTVECPLCQVVCQHPRAVY
FHIETPQHQDWCRSLFQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035647XLOC_035647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056579TCONS_00056579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002999Tudor
IPR007502Helicase-assoc_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002999Tudor domainSMARTSM00333TUDOR_7coord: 946..1001
e-value: 1.2E-4
score: 31.4
IPR002999Tudor domainPFAMPF00567TUDORcoord: 898..1013
e-value: 3.8E-14
score: 52.7
IPR002999Tudor domainPROSITEPS50304TUDORcoord: 947..1003
score: 10.906
IPR007502Helicase-associated domainSMARTSM00847ha2_5coord: 561..661
e-value: 2.0E-13
score: 60.6
IPR007502Helicase-associated domainPFAMPF04408HA2coord: 565..641
e-value: 1.0E-10
score: 41.7
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 133..316
e-value: 1.6E-26
score: 104.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 145..311
score: 21.147
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 403..499
e-value: 1.2E-17
score: 74.6
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 380..498
e-value: 5.5E-14
score: 52.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 371..539
score: 14.308
NoneNo IPR availableGENE3D2.40.50.90coord: 985..1078
e-value: 6.8E-23
score: 80.6
NoneNo IPR availableGENE3D3.40.50.300coord: 134..296
e-value: 5.4E-31
score: 107.1
NoneNo IPR availableGENE3D3.40.50.300coord: 356..513
e-value: 1.3E-28
score: 99.1
NoneNo IPR availableGENE3D2.30.30.140coord: 923..984
e-value: 8.4E-11
score: 41.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1083..1103
NoneNo IPR availableCDDcd00046DEXDccoord: 152..292
e-value: 4.88696E-25
score: 102.801
NoneNo IPR availableCDDcd00079HELICccoord: 339..506
e-value: 1.591E-8
score: 53.3957
NoneNo IPR availableCDDcd04508TUDORcoord: 951..994
e-value: 1.45543E-8
score: 52.2151
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 927..1015
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 142..294
e-value: 6.6E-10
score: 38.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 363..671
coord: 122..333

Blast
BLAST of TCONS_00056579-protein vs. Swiss-Prot (Human)
Match: TDRD9 (ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3)

HSP 1 Score: 866.3 bits (2237), Expect = 0.000e+0
Identity = 509/1273 (39.98%), Postives = 750/1273 (58.92%), Query Frame = 0
Query:  129 HQYDDTLPITDERQNLVQTIESNRVTIIQGSTGSGKTTQVPQFILDYYRSHGRYCNILVTQPRRIAAISVARRVAEERNWPLGTLIGYQVARDRNMSEDTRVTYMTTGVLLQKLIKNKSLGEYTHVILDEVHERDQDIDFCMLVVRKFLRNVSRHVKVILMSATVDCTLFSNYFSILINGKQEGAPIIRVDGKMFDVSEVYFEDISGL----MEPPQQNINEPEISFKCYQLCRELIMILD----KDEVQNAQADGTMLENRGTVLCFLPGLPEIKDMHKHLNDIEDKLKLKIIPLHSSITSHEQNKVFIPAGKYERKVILSTNIAESSITVPDIKYVIDFCLTKQNEVDPDTNYQRLTLQWASKASLTQRKGRAGRVSDGHCFRMISSRMF-HDLPEYCTPEMKRAPLEQVILKVKLLELGPPAMILQLALEPPGMADVKRTILMLKEVGALTVK-QNDRINPLDGDLTFVGRVLGSLPVDVSIGKLLLIGYAFGVLEECIVIAACLSLKSIFMQPFKQELKAYSNKMHWSGGSGSDLIASFNAFMSWKFRKEHRGFGMP--EIKWAKENFVEVRRFREIDELAKELRDRLTGFN--ILSPRNIFHSEKLNKDDELIIKLVIAGAFYPNYFQTAEIDEADAAKQMSGRNPFTCVLVNGAPPTLVHYRSKVAQLFRNCGRGKKLFFENSRAFVEFEND--ESSPVAVAVYKAIKMRLLRLPLSIFVSKKEDEELRCNLMENPIEAFNPETGLKTNRFNTNFNDRDGALSVTIVGDSKRVEVKDTGYIYIFVQEVTHPGQIWVTYANPDTRTLMFQLHQKINILGGRNLKPLPKDDIYVGGYCLALFED----EFHRAEIKMTTENGVQVFFLDFGNKAVVEPKNLKICSEALLETPFQAFLCELAEIRPIHGT------WSEESRLRFEQLVQVGSKQLIGKIYSCIHDTCRIELF-----DGDLSINRLLIEEGHAQFQEETLVSKTRHEASKN---------NQKSKPMPK----------VAQARSTIPLDEEVLKIQLRGPFSPYELSFGGLSALSRMRATTVGQDSVNSVVMCEEPQDKRQRLMVAQSIQINQAGSNVTVRETTLFPNIHGLNALLPLLFAPVAEIRCDKARRKYTGALVGLGCT-EKGMPILPDHDMEIVFDVAFNDEDLSAINCVRLFINMII--GIEEERIDKAHKVIEEIQSHARERLTRIV--TKQRQEMDPIYFRKEFQWNQNDPSNLLHPDSANKMLEEKPCHLYLYHKGV 1346
            ++Y D LPI+  ++ +V  IESN V II G+TGSGK+TQ+PQ+ILD+Y     YC+I+VTQPR+I A S+AR +++ER W LG ++GYQV  ++  +EDTR+ YMTTGVLLQK++  KSL E+TH+I+DEVHER +++DF +LVVRK LR  SR VKV+LMSAT+ C  F++YF++ +  K   A I  V+GK   V E Y  D+  +    + P    + EP I+   Y++   LI + D    K+    A +    +  R +VL FLPGL EI  MH+ L  +  K +L++ PLHSS+   EQN VF+      RK+ILSTNIAESS+TVPD+KYVIDFCLT+    D DTNYQ L L WASK S  QRKGRAGRVS G+C+R++    + + +P++  PEM R PL   ILKVKLL++G P  +L  AL PPG++D++RTIL+LKEVGAL V  Q +  NP DG+LTF+GRVL  LPV+  +GKL+++G+ FG L+EC++IAA LSLK+ F  PF+Q L  Y NK+++SG S SD IA   AF +WK  ++      P  E+ W + N+++++R RE+ EL +EL+ R++ FN  + S R +   E + K    I+++V+AGAFYPNYF   + DE  A ++++G++P T V++   PP    Y  ++  LFR CG+ K + F+ ++AFVEF  +  E      AVY AIKM  L++ L + V   E+       +E  ++  N  + L+  R N +F  +           S R +      + I V EV   G  W    + +   ++ +L  +IN L    L   P  D+     CLA F D     + RA++   + N  +VFF+D+GNK+ V+   L       LE PFQA   ++ ++RP   +      WS+ +   F  L  V    L+ K++S +H    ++++        ++I  +LI++G+A+  EE+  SK  HE  K             S P P           + ++ ST  L     K +L GPF+PYEL    L+ +S+ R   + ++S+NSV++ + P+D  QR++VA S+ IN  GS + +RET+L P+I GL ALL +LFAPV E+R D+  + YTG L GLG     G  ILP+HDME+ FDV F+ ED+  +N +R  IN ++  G    +     +V  ++Q  AR++L  +   +K R+++ P +  K ++WNQ DP  L+   +  +    K   LY  HK V
Sbjct:  127 YKYPD-LPISRYKEEVVSLIESNSVVIIHGATGSGKSTQLPQYILDHYVQRSAYCSIVVTQPRKIGASSIARWISKERAWTLGGVVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIIIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATISCKEFADYFAVPVQNKMNPAYIFEVEGKPHSVEEYYLNDLEHIHHSKLSP--HLLEEPVITKDIYEVAVSLIQMFDDLDMKESGNKAWSGAQFVLERSSVLVFLPGLGEINYMHELLTSLVHK-RLQVYPLHSSVALEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSRGYCYRLVHKDFWDNSIPDHVVPEMLRCPLGSTILKVKLLDMGEPRALLATALSPPGLSDIERTILLLKEVGALAVSGQREDENPHDGELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMPFRQHLDGYRNKVNFSGSSKSDCIALVEAFKTWKACRQTGELRYPKDELNWGRLNYIQIKRIREVAELYEELKTRISQFNMHVDSRRPVMDQEYIYK-QRFILQVVLAGAFYPNYFTFGQPDEEMAVRELAGKDPKTTVVLKHIPPYGFLYYKQLQSLFRQCGQVKSIVFDGAKAFVEFSRNPTERFKTLPAVYMAIKMSQLKVSLELSVHSAEE-------IEGKVQGMNV-SKLRNTRVNVDFQKQTVDPMQVSFNTSDRSQTVTDLLLTIDVTEVVEVGHFWGYRIDENNSEILKKLTAEINQLTLVPLPTHPHPDL----VCLAPFADFDKQRYFRAQVLYVSGNSAEVFFVDYGNKSHVDLHLLMEIPCQFLELPFQALEFKICKMRPSAKSLVCGKHWSDGASQWFASL--VSGCTLLVKVFSVVHSVLHVDVYQYSGVQDAINIRDVLIQQGYAELTEESYESKQSHEVLKGLFSKSVENMTDGSVPFPMKDDEKYLIRILLESFSTNKLGTPNCKAELHGPFNPYELKCHSLTRISKFRCVWIEKESINSVIISDAPEDLHQRMLVAASLSINATGSTMLLRETSLMPHIPGLPALLSMLFAPVIELRIDQNGKYYTGVLCGLGWNPATGASILPEHDMELAFDVQFSVEDVVEVNILRAAINKLVCDGPNGCKCLGPERV-AQLQDIARQKLLGLFCQSKPREKIVPKWHEKPYEWNQVDP-KLVMEQADRESSRGKNTFLYQLHKLV 1378          
The following BLAST results are available for this feature:
BLAST of TCONS_00056579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TDRD90.000e+039.98ATP-dependent RNA helicase TDRD9 OS=Homo sapiens G... [more]
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