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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00056601-protein ID=TCONS_00056601-protein|Name=TCONS_00056601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp MRLSSIRTTCPSQRNCDFISMLSRPMQEHFERISLFTMASSSYEIGGIFN VLQKTVAVDNTPTSSDEEEPKDTELANLFSFKPPEIIEDKDEENDIPDEL IKEYISAEDKKPVEPKLKKKNLDDEKEATKKFDEESPERKARTVFVGNVA LTVKKKVLKKIFSKFGEIESIRIRSVPRADPKTSKKVAFIKKEFHDERDN MNAYVVFKNKEDAVKSLKSNGIIVEEKHIRVDLSENKKHNTSASIFVGNL PFNAKEDDLREHFAKCGNIEDIRVVRDKATGIGKGFAYIRFKGKENVMFG LKMNGSEFDGRKLRVFKAKDKEEVNTTNTAXMNL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 143..232 e-value: 2.6E-11 score: 53.6 coord: 244..316 e-value: 4.2E-23 score: 92.8 |
IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 144..199 e-value: 1.7E-8 score: 34.0 coord: 245..314 e-value: 3.5E-18 score: 65.1 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 142..236 score: 13.311 |
IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 243..320 score: 19.11 |
IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 135..239 |
IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 240..324 |
None | No IPR available | GENE3D | 3.30.70.330 | | coord: 239..331 e-value: 1.8E-27 score: 95.0 |
None | No IPR available | GENE3D | 3.30.70.330 | | coord: 131..238 e-value: 4.1E-18 score: 64.9 |
IPR034220 | RBM34, RNA recognition motif 1 | CDD | cd12394 | RRM1_RBM34 | coord: 142..232 e-value: 1.27239E-34 score: 121.983 |
IPR034221 | RBM34, RNA recognition motif 2 | CDD | cd12395 | RRM2_RBM34 | coord: 244..316 e-value: 7.02849E-32 score: 114.18 |
Blast
BLAST of TCONS_00056601-protein vs. Swiss-Prot (Human)
Match: RBM34 (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 3.258e-52 Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 0 Query: 133 DEESPERKARTVFVGNVALTVKKKVLKKIFSKFGEIESIRIRSVPRADPKTSKKVAFIKKEFHDERDNMNAYVVFKNKEDAVKSLKSNGI-IVEEKHIRVDLSENKKHNTSASIFVGNLPFNAKEDDLREHFAKCGNIEDIRVVRDKATGIGKGFAYIRFKGKENVMFGLKMNGSEFDGRKLRVFKAKDKEEVNTTNT 329
EE + RTVFVGN+ +T KK LK F ++G+IES+R RS+ A+ SKK+A IK++ H ++ N+NAYVVFK + A ++LK NG I + IRVDL+ S+FVGNLP+ +E + +HF CG+I +R+VRDK TGIGKGF Y+ F+ ++V LK+N SE GRKLRV ++ +KE+ N+
Sbjct: 176 QEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNS 373
The following BLAST results are available for this feature:
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