TCONS_00056603-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056603-protein
Unique NameTCONS_00056603-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056603-protein ID=TCONS_00056603-protein|Name=TCONS_00056603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MGGMGSRASIDSVDIKPPPGIQPPPPHAHAHPSQQTPASTSQSSPQHVQQ
NIQQPSQSTSSTHNHHPLQQQQPPPHHHQQMTSSHQHQHQSLNTIPPSPS
GSSQGLPSNSHPSWSVNAPPSSAPTPSPMTPSVDSGRGSVSSVGMNFPAP
SPANSLSSGPSFWNPPEPSNRSNYHRPGSQSSHHRNQPPDYWTSIAYYEL
DQHVGEVFKVPKRFNSVIVDGYVDASGKGGNRFCLGQLSNVHRTEPTEKA
LLYIGRGIQLDRRGEGDIWVRCLSEQSVFVQSYYLDRQAGRSPGDAVHKI
YPQAYIKVFDLRMCYDQMKQQAQAAQAAAAAQVAAVAGGAGPAYSMSHSS
ASIGVDDLRRLCLLRLSFIKGWGPDYPRQSIKQTPCWIEVHLHRALQLLD
EVLHQIPINEPMPSDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035650XLOC_035650Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056603TCONS_00056603Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001132SMAD_dom_Dwarfin-type
IPR017855SMAD_dom-like
IPR008984SMAD_FHA_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001132SMAD domain, Dwarfin-typeSMARTSM00524dwBultra2coord: 190..393
e-value: 3.1E-94
score: 329.0
IPR001132SMAD domain, Dwarfin-typePFAMPF03166MH2coord: 191..393
e-value: 4.5E-69
score: 232.2
IPR001132SMAD domain, Dwarfin-typePROSITEPS51076MH2coord: 192..416
score: 61.045
IPR017855SMAD domain-likeGENE3D2.60.200.10coord: 183..412
e-value: 3.6E-89
score: 297.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..187
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 160..407

Blast
[Close]
BLAST of TCONS_00056603-protein vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.080e-104
Identity = 166/236 (70.34%), Postives = 193/236 (81.78%), Query Frame = 0 
Query:  189 PDYWTSIAYYELDQHVGEVFKVPKRFNSVIVDGYVDASGKGGNRFCLGQLSNVHRTEPTEKALLYIGRGIQLDRRGEGDIWVRCLSEQSVFVQSYYLDRQAGRSPGDAVHKIYPQAYIKVFDLRMCYDQMKQQAQAAQAAAAAQVAAV---------AGGAGPAYSMSHSSASIGVDDLRRLCLLRLSFIKGWGPDYPRQSIKQTPCWIEVHLHRALQLLDEVLHQIPINEPMPSD 415
            P+YW SIAY+E+D  VGE FKVP     V VDGYVD SG  G+RFCLGQLSNVHRTE  E+A L+IG+G+QL+ +GEGD+WVRCLS+ +VFVQSYYLDR+AGR+PGDAVHKIYP AYIKVFDLR C+ QM+QQA  AQAAAAAQ AAV          GG  PA S+S ++A IGVDDLRRLC+LR+SF+KGWGPDYPRQSIK+TPCWIE+HLHRALQLLDEVLH +PI +P P D
Sbjct:  320 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSG--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLS-AAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 552
The following BLAST results are available for this feature:
BLAST of TCONS_00056603-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMAD41.080e-10470.34Mothers against decapentaplegic homolog 4 OS=Homo ... [more]
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