Forkhead box protein (polypeptide) - C. hemisphaerica

Overview
NameForkhead box protein
Unique NameTCONS_00056822-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056822-protein ID=TCONS_00056822-protein|Name=Forkhead box protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MNTIAAIEVAAGCRKLTKHSIESLTSPIESENGSDGGSTSPKKENKDRNK
VHSDKVTSYTEMIARAILASPNVMATLADIYSHLISKYPLLKGRGKSWKN
SVRHTLSLNEWFIKIPKLDNAKCCYWSIHPSYLQRFRKGDFQKQRKAAIT
KLRTHHHNSGHHHNRYYDLNYDISPTMDYHFPTHFNEMNNTSVSPHANFS
SWPSRSPYEEYQTFFPPSGTAQQYQSPYQPTQMYNQQGTPPPYPVHPATN
YPHSYYGAPEHENFFNYRPAETNNYYNAPPSHMRCGINRTVDPYRPAERE
AASVLDDQQSNPHQPINSEMKAESTGC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035798XLOC_035798Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056822TCONS_00056822Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 54..67
score: 35.6
coord: 98..115
score: 62.48
coord: 75..92
score: 28.22
IPR001766Fork head domainSMARTSM00339forkneu4coord: 58..140
e-value: 4.7E-20
score: 82.6
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 57..136
e-value: 5.3E-23
score: 81.0
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 54..146
score: 21.072
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 37..139
e-value: 8.7E-25
score: 86.3
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 58..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..327
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 98..104

Blast
[Close]
BLAST of Forkhead box protein vs. Swiss-Prot (Human)
Match: FOXF1 (Forkhead box protein F1 OS=Homo sapiens GN=FOXF1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.963e-16
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 0 
Query:   35 DGGSTSPKKENKDRNKVHSDKVT--SYTEMIARAILASPNVMATLADIYSHLISKYPLLKGRGKSWKNSVRHTLSLNEWFIKIPKLDN--AKCCYWSIHPSYLQRFRKGD 140
            D  S+ P K  K    +   +    SY  +I  AI +SP    TL++IY  L S++P  +G  + WKNSVRH LSLNE FIK+PK      K  YW+I P+    F +G 
Sbjct:   27 DPASSGPSKAKKTNAGIRRPEKPPYSYIALIVMAIQSSPTKRLTLSEIYQFLQSRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGS 136
The following BLAST results are available for this feature:
BLAST of Forkhead box protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXF13.963e-1640.00Forkhead box protein F1 OS=Homo sapiens GN=FOXF1 P... [more]
back to top