TCONS_00056877-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056877-protein
Unique NameTCONS_00056877-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056877-protein ID=TCONS_00056877-protein|Name=TCONS_00056877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MIPTFSQVPFYVGNQQYHNNNNIVDDAGKIFVGGIPPDASRDTITEYFST
YGAVSDVIIMVDNVTGRSRGFCFVTFQDQLAVNKVLAASQKHSINGKVVD
AKRAVPKGPNQSQILRAMGVSSNRADRNPDCKIFVGGVAQGTTESDLENY
FKDYGTVLEVKIPKDQNTQRARGFSFVLFETPECVIAATKERYHRINNKT
VEVKTVQIQHQKGHSEGSDDGQLQSPPSPFMRSGGGFYNPQGYPRYVGGH
GMNSQGYYENHPPYEPSPSGSTGSVASLESSGYGVSSRGQQGLDNYSYMA
PMYAGMAELSISGRYPLRPPYHMAAASGSQVGGYAQSPSAVSPSSYSDYS
SGGGSGAGGATPAAAYAPNYGAAIATHNSVPSGVTPFAPASTPQPGPGSQ
SFSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035833XLOC_035833Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056877TCONS_00056877Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 29..102
e-value: 3.0E-22
score: 89.9
coord: 132..204
e-value: 9.6E-21
score: 84.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 133..199
e-value: 6.3E-15
score: 54.7
coord: 30..99
e-value: 1.4E-16
score: 60.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 28..106
score: 16.534
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 131..213
score: 16.551
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 113..212
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 16..123
NoneNo IPR availableGENE3D3.30.70.330coord: 119..226
e-value: 1.1E-19
score: 70.2
coord: 13..118
e-value: 1.0E-22
score: 80.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 381..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..290

Blast
[Close]
BLAST of TCONS_00056877-protein vs. Swiss-Prot (Human)
Match: DAZP1 (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.371e-40
Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 0 
Query:   20 NNNIVDDAGKIFVGGIPPDASRDTITEYFSTYGAVSDVIIMVDNVTGRSRGFCFVTFQDQLAVNKVLAASQKHSINGKVVDAKRAVPKGPNQSQILRAMGVSSN-RADRNPDCKIFVGGVAQGTTESDLENYFKDYGTVLEVKIPKDQNTQRARGFSFVLFETPECVIAATKERYHRINNKTVEVKTVQIQHQKGHSEG 217
            NN+  D+ GK+FVGG+    +++T+  YFS YG V D +IM D  T +SRGF FV F+D   V  VLA S+ H+++G+ +D K   P+G    +     G     R+D +   KIFVGG+     E++L  YFK +G V EV +  D   QR RGF F+ FE  + V  A    +H I  K VEVK  + +  K  + G
Sbjct:    2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA-SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPG 199
The following BLAST results are available for this feature:
BLAST of TCONS_00056877-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAZP13.371e-4039.20DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
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