TCONS_00056962-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056962-protein
Unique NameTCONS_00056962-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056962-protein ID=TCONS_00056962-protein|Name=TCONS_00056962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MLGQVLRQTRAVSRQGLSASVRNASTLIVVEHNDNQLTPATLHSVTAAKQ
LGGDVTCLVAGTNCGPAVESISKIEGVNKVLVAQHDLYKGFLPEMLTPLV
LEAQNQFKFSHILATATSFGKNLLPRIAAKLDVAPISDVTEIEDENTFVR
TIYAGNAVTKIKSNDGIKVMTVRATSFDPAAEGASGIASENVDPITGSED
LAKWEGAELSKSDRPEITSASVVVSGGRGLKSGENFELLYKLADKMNAAV
GASRAAVDAGYVPNDMQIGQTGKMVAPELYIAVAISGAIQHLAGMKDSKT
IVAINKDADAPIFQGISIKLLHYFISNQVTKARALKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035872XLOC_035872Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056962TCONS_00056962Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014730ETF_a/b_N
IPR001308ETF_a/FixB
IPR029035DHS-like_NAD/FAD-binding_dom
IPR014729Rossmann-like_a/b/a_fold
IPR014731ETF_asu_C
IPR018206ETF_asu_C_CS
IPR033947ETF_alpha_N
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0009055electron carrier activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014730Electron transfer flavoprotein, alpha/beta-subunit, N-terminalSMARTSM00893ETF_2coord: 26..213
e-value: 3.7E-46
score: 169.4
IPR014730Electron transfer flavoprotein, alpha/beta-subunit, N-terminalPFAMPF01012ETFcoord: 26..186
e-value: 9.1E-41
score: 139.6
IPR001308Electron transfer flavoprotein alpha subunit/FixBPIRSFPIRSF000089Electra_flavoP_acoord: 22..318
e-value: 2.5E-96
score: 320.9
IPR029035DHS-like NAD/FAD-binding domainGENE3D3.40.50.1220coord: 211..330
e-value: 1.9E-50
score: 169.4
IPR029035DHS-like NAD/FAD-binding domainSUPERFAMILY52467DHS-like NAD/FAD-binding domaincoord: 215..317
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 14..203
e-value: 9.7E-43
score: 145.7
IPR014731Electron transfer flavoprotein, alpha subunit, C-terminalPFAMPF00766ETF_alphacoord: 216..298
e-value: 2.9E-36
score: 123.3
IPR018206Electron transfer flavoprotein subunit alpha, conserved sitePROSITEPS00696ETF_ALPHAcoord: 279..305
IPR033947Electron transfer flavoprotein, alpha subunit, N-terminalCDDcd01715ETF_alphacoord: 25..193
e-value: 6.89828E-67
score: 208.949
NoneNo IPR availableSUPERFAMILY52402Adenine nucleotide alpha hydrolases-likecoord: 25..211

Blast
[Close]
BLAST of TCONS_00056962-protein vs. Swiss-Prot (Human)
Match: ETFA (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens GN=ETFA PE=1 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.848e-139
Identity = 188/294 (63.95%), Postives = 236/294 (80.27%), Query Frame = 0 
Query:   21 VRNASTLIVVEHNDNQLTPATLHSVTAAKQLGGDVTCLVAGTNCGPAVESISKIEGVNKVLVAQHDLYKGFLPEMLTPLVLEAQNQFKFSHILATATSFGKNLLPRIAAKLDVAPISDVTEIEDENTFVRTIYAGNAVTKIKSNDGIKVMTVRATSFDPAAEGASGIASENVDPITGSEDLAKWEGAELSKSDRPEITSASVVVSGGRGLKSGENFELLYKLADKMNAAVGASRAAVDAGYVPNDMQIGQTGKMVAPELYIAVAISGAIQHLAGMKDSKTIVAINKDADAPIFQ 314
            +R  STL++ EH ++ L P TL+++TAA +LGG+V+CLVAGT C    + + K+ G+ KVLVAQHD+YKG LPE LTPL+L  Q QF ++HI A A++FGKNLLPR+AAKL+VAPISD+  I+  +TFVRTIYAGNA+  +K ++ +KV +VR TSFD AA      +SE     T   ++++W   +L+KSDRPE+T A VVVSGGRGLKSGENF+LLY LAD+++AAVGASRAAVDAG+VPNDMQ+GQTGK+VAPELYIAV ISGAIQHLAGMKDSKTIVAINKD +APIFQ
Sbjct:   17 LRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASS-TSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQ 309
The following BLAST results are available for this feature:
BLAST of TCONS_00056962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETFA2.848e-13963.95Electron transfer flavoprotein subunit alpha, mito... [more]
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