TCONS_00056972-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056972-protein
Unique Name	TCONS_00056972-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	970

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056972-protein ID=TCONS_00056972-protein|Name=TCONS_00056972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=970bp
MASSKMKKEFIVHDESTLSAREFHEKFKKNEPKNCDLFTLDIFEPSSDED
EEKAQEKAKNSKEKPTYRAIAKANDVIKKPPKDHTELVNCFRERLYLQSH
LKYTPVEEQKELADVLIMAIRAVWPQHRKQATHPFLSENGNVELQRRVAV
CVIETVERLFYEYVTKAEELNSQHIFSSQANLSRLKTQILHEANKSLDVL
TLRRKITDDMRDNGGWLKHPKKGYIKTLLKVLDQWTKVTQECASHKEYVR
RQMRDLKTMMPDLENHPMREPLTQLIHHYHQLVEERAREANGGSLVLSEY
EGVNEEENEEEEEKGSRNDCENADDDDQGGKNRLSHKESISKIINDLQIT
LEDLDEGLNPRVVYRRSNSMPRLHDDLTLHEGFEDLGVGELRERKQSIEQ
MVLNDSIKETAIKKNVDLLSPREDLRYLIAKKNQKEETPDFTDNDFSPLL
QAQKPRSPRKKKVHQPVREKPTERSASNNELTPAEAERLEKKAEEYSQPP
TLNIKVPGKKIVRICDGRISKRTNASALTLNMHPTIYNEFLDEVDMETIN
HLDHHLYAGLEILEVYNEITKSSTKDFLAFDLDDCVEKCPEKCRNLPLLF
MSGLLHEPTNVRFLNPELQSCEQSPWKDHDDVNEWKNEPKFAGIGREDML
KIQTKADLRRSGLFESVDLGGAGQLAKNYASWLTWYKNNIDVDDYRKFIS
NHETDYLCQLHHLYDSNESEEVILEAERTSAHLKMLREREEIRRKLLQEK
CEYHKGFWNAQCINLGGLGREPDVAKIPSDTDKKGPEEPDRHTSFLYLQN
RLEQIWKLLRMPDGQRVDMAIKHSSDPTLEKLNRVVQAWDSITKLIVERE
NWMAKLEAFERNASDPNRFFEKGAKGSSIVRLNESRVREKLEKEIKRLDV
EIIPMLEDIKRKFNDDVTYQGRNYMLKIQSDRTEMLYWLQQERRTQRIQE
LNNKFQLTPLSTVDLSAPVN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035877	XLOC_035877	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056972	TCONS_00056972	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 881..901
None	No IPR available	COILS	Coil	Coil	coord: 842..862
None	No IPR available	COILS	Coil	Coil	coord: 303..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 436..501
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..336

Blast

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BLAST of TCONS_00056972-protein vs. Swiss-Prot (Human)
Match: CCD87 (Coiled-coil domain-containing protein 87 OS=Homo sapiens GN=CCDC87 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.799e-47
Identity = 166/593 (27.99%), Postives = 270/593 (45.53%), Query Frame = 0

Query:  365 RRSNSMPRLHDDLTLHEGFEDLGVGELRERKQSIEQMVLNDSIKETAIKKNVDLLSPREDLRYLIAKKNQKEETPDFTDNDFSPLLQAQKPRSP----RKKKVHQPVREKPTERSASNNELTPAEAERLEKKAEEYSQPPTLNIKVPGKKIVRICDGRISKRTNASALTLNMHPTIYNEFLDEVDMETINHLDHHLYAGLEILEVYNEITKSSTKDFLAFDLDDCVEKCPEKCRNLPLLFMSGLLHEPTNVRFLNPELQSCEQSPWKDHDDVNEWKNEPKFAGIGREDMLKIQTKADLRRSGLFESVDLGGAGQLAKNYASWLTWYKNNIDVDDYRKFISNHETDYLCQLHHLYDSNESEEVILEAERTSAHLKMLREREEIRRK---LLQEKCEYHKGFWNAQCI--NLGGLGREPDVAKIPSDTDKKGPEEPDRHTSFLYLQNRLEQIWKLLRMPDGQRVDMAIKHSSDPTLEKLNRVVQAWDSITKLIVERENWMAKLEAFERNASDPNRFFEKGAKGSSIVRLNESRVREKLEKEIKRLDVEIIPMLEDIKRKFNDDVTYQGRNYMLKIQSDRTEMLYWLQQERRTQRI 948
            RR  SMP L +   L +   +LG+  L  R        L   +  T  K  +  L   EDL+ LI K   +       D+   PLL     R P    R +++ + +R    E ++   +  P ++  L      + QP T+ +K+  + +V+    R+S R    +  +     +YN    E+D + I  +D   + G    EVY E+    + D L FD    VE  P   ++      S  L +    + +NPEL                           R + L+  TK    +     S+    + +   N AS +  +K  + VDDY K+++NHETD+L  +  +++     E++  A          RE  EI+     L  E+ ++  G W+   +  +  G G+ P +             EP +    L LQ  LEQ+W +L +PD  +VDM IK+SS   L +L  +V AW+   K I  RE  +A+LE FE  AS+PNRFF+K    SS   L E++VR  L +++  ++  ++ +LE+I+  F + V ++GR Y+ K++SD+ EMLYWLQQ+RR + +
Sbjct:  307 RRGQSMPSLREGWRLAD---ELGLPPLPSRP-------LTPLVLATESKPELTGLIVAEDLKQLIKKMKLEGTRYPPLDSGLPPLLGVVT-RHPAAGHRLEELEKMLRNLQEEEASGQWDPQPPKSFPL------HPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFHIEGAGALYNHLAGELDPKAIEKMDIDNFVGSTTREVYKELMSHVSSDHLHFDQGPLVE--PAADKDWSTFLSSAFLRQEKQPQIINPELVGLYSQ---------------------RANTLQSNTK----KMPSLPSLQATKSWEKWSNKASLMNSWKTTLSVDDYFKYLTNHETDFLHVIFQMHEEEVPVEIVAPA----------RESLEIQHPPPLLEDEEPDFVPGEWDWNTVLEHRLGAGKTPHLG------------EPHK---ILSLQKHLEQLWSVLEVPDKDQVDMTIKYSSKARLRQLPSLVNAWERALKPIQLREALLARLEWFEGQASNPNRFFKKTNLSSSHF-LEENQVRSHLHRKLNLMESSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHL 829

The following BLAST results are available for this feature:

BLAST of TCONS_00056972-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056972-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD87	1.799e-47	27.99	Coiled-coil domain-containing protein 87 OS=Homo s...	[more]

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TCONS_00056972-protein (polypeptide) - C. hemisphaerica