TCONS_00056983-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056983-protein
Unique NameTCONS_00056983-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1066

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056983-protein ID=TCONS_00056983-protein|Name=TCONS_00056983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1066bp
QYFNRKSEKKSQQLFNMAEKRKFNEEDMDGKIVRIKLKDFLTYDDCEFKP
GEKLNVILGPNGTGKSSIVCAICLGLGGRTNLLGRAKLLSDYVKHRKKEA
TIEIELFKKNESNLIVRRTFNTQSTNSKFEINGRVVTESAVINTVKKMNI
QMDNLCQFLPQDRVIEFAKMNARELLVATEKAVGPDGMHADHVKLIDLRK
KSGELESMIDGRKTYKEQIETSNQRLERDVKRYKEREKHQEKIQILKKKR
PWVLYEEARKETIAAKDAKKVVEKKIKDMRKKHSPLKEKIDKAKVALKKA
EDEIKVLSAEMNKTGQDMKKIDDKLEKQNDRIAEARQDFTSVQQDEQERH
KKISQLEKQIESLQREYEEAPDPEAMKPRITEIHNEVKAIQHQLNELNRQ
KTEILSDNTNLKLQITALKRRLAEVDNVDHQKLETLRRVDSDTYNAVLWL
RQNKQMFSGTVYEPIMTQINMHDMKNAFYLENAISFRDMKAFVCQNREDQ
KLLSNQTRERLNLQISAVCPPRDAKDQYPPQQRIDNYKRFGFHSYITDLF
QCPKTVYQYLCEAFHLHNIPIGVEAIDKNPENVINNTSLFRFYTPNNSYS
INKSRYADKKSTSVNTVRKDANLLNPSVDLEVKKQLDTELSQHEHQMKVN
NGKLEEISRKENALQKEQEKLRTEKKSLMTQMKKRTTLSNQIETRVKRLD
EEKKTKIDIEKEERKFRDKVKKINATRIALVKEYQTVVQRSLEHGKEHIR
LNIRRLQVKREVEVAEKNFRIVDSDLNNFIEQFENLSRGHNEAKNRAKKL
LDEAKRLTGSTPDSLVPDALNRVFETLPDTIEEIEELICEEEASLNCQFE
TNPEVIKNYEKNKREISKLETELQDKDGELTEIKNTIEELLQSWLVPLEE
LINRINERYSDFFRRMGCAGEVLLKRDPNDDYSQYGIQINVKFRAENKMK
ELTSYFQSGGERSVSTMLYLISLQELTKCPFRLVDEINQGMDPKNERRVF
ELVVETVCRPNTSQYFLITPKLLPDLHYTEQMTILTVLNGYYMVPHNKFR
LHDLIERKRKLNAQGA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035883XLOC_035883Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056983TCONS_00056983Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 650..681
NoneNo IPR availableCOILSCoilCoilcoord: 776..810
NoneNo IPR availableCOILSCoilCoilcoord: 216..243
NoneNo IPR availableCOILSCoilCoilcoord: 283..366
NoneNo IPR availableCOILSCoilCoilcoord: 856..893
NoneNo IPR availableCOILSCoilCoilcoord: 380..428
NoneNo IPR availableGENE3D1.10.287.370coord: 374..685
e-value: 1.3E-4
score: 21.4
NoneNo IPR availableGENE3D1.20.5.170coord: 270..370
e-value: 1.5E-6
score: 27.7
NoneNo IPR availableGENE3D3.40.50.300coord: 739..1023
e-value: 1.4E-13
score: 50.3
NoneNo IPR availableGENE3D3.40.50.300coord: 31..197
e-value: 1.3E-28
score: 99.7
NoneNo IPR availableCDDcd03277ABC_SMC5_eukcoord: 856..1043
e-value: 1.31922E-58
score: 200.129
NoneNo IPR availableCDDcd03277ABC_SMC5_eukcoord: 30..177
e-value: 9.41166E-55
score: 189.344
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 32..1019
e-value: 7.0E-12
score: 45.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 780..1020
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 233..269
coord: 32..195
coord: 945..1022

Blast
BLAST of TCONS_00056983-protein vs. Swiss-Prot (Human)
Match: SMC5 (Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2)

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 387/1049 (36.89%), Postives = 616/1049 (58.72%), Query Frame = 0
Query:   28 MDGKIVRIKLKDFLTYDDCEFKPGEKLNVILGPNGTGKSSIVCAICLGLGGRTNLLGRAKLLSDYVKHRKKEATIEIELFKKNESNLIVRRTFNTQSTNSKFEINGRVVTESAVINTVKKMNIQMDNLCQFLPQDRVIEFAKMNARELLVATEKAVGPDGMHADHVKLIDLRKKSGELESMIDGRKTYKEQIETSNQRLERDVKRYKEREKHQEKIQILKKKRPWVLYEEARKETIAAKDAKKVVEKKIKDMRKKHSPLKEKIDKAKVALKKAEDEIKVLSAEMNKTGQDMKKIDDKLEKQNDRIAEARQDFTSVQQDEQERHKKISQLEKQIESLQREYEEAPDPEAMKPRITEIHNEVKAIQHQLNELNRQKTEILSDNTNLKLQITALKRRLAEVDNVDHQKLETLRRVDSDTYNAVLWLRQNKQMFSGTVYEPIMTQINMHDMKNAFYLENAISFRDMKAFVCQNREDQKLLSNQTRERLNLQISAVCPPRDAKDQYPPQQRIDNYKRFGFHSYITDLFQCPKTVYQYLCEAFHLHNIPIGVEAIDKNPENVINNTSLFRFYTPNNSYSINKSRYADKKSTSVNTVRKDANLLNPSVDLEVKKQLDTELSQHEHQMKVNNGKLEEISRKENALQKEQEKLRTEKKSLMTQMKKRTTLSNQIETRVKRLDEEKKTKIDIEKEERKFRDKVKKINATRIALVKEYQTVVQRSLEHGKEHIRLNIRRLQVKREVEVAEKNFRIVDSDLNNFIEQFENLSRGHNEAKNRAKKLLDEAKRLTGSTPDSLVP---------------DALNRVFETLPDTIEEIEELICEEEASLNCQFETNPEVIKNYEKNKREISKLETELQDKDGELTEIKNTIEELLQSWLVPLEELINRINERYSDFFRRMGCAGEVLLKRDPNDDYSQYGIQINVKFRAENKMKELTSYFQSGGERSVSTMLYLISLQELTKCPFRLVDEINQGMDPKNERRVFELVVETVCRPNTSQYFLITPKLLPDLHYTEQMTILTVLNGYYMVPHNKFRLHDLIERKRKL 1061
            ++G IVRI +++FLTYD CE  PG  LN+I+G NGTGKSSIVCAICLGL G+   +GRA  +  +VK       +EIELF+ +  NL++ R  +     S + IN +  T+  V   V  +NIQ+ NLCQFLPQD+V EFAK++  ELL ATEK++GP  MH  H +L +LR+K  +LE+    +  Y +++   N+R ++DV+R+ ER++H + I++L+ KRPWV YE  R+E    K  +  V+++++ +++   P+  +I++ +      E  IK  + ++ +  Q  K+  D +E+++  I E +Q     Q +E +R ++I    K IE LQ E +   + E ++P+I  I N+++ IQ +      +  +   +   L+ +  ++   +   DN+ +QK + LR+   DTY+AVLWLR N+  F   V EPIM  INM D KNA Y+EN I   D++AFV +++ED ++   + R+   L+++AV  P+ +     P + ++  K++GF SY+ +LF  P  V  YLC  +H+H +P+G E   +  E VI  T L + YT    Y +  S Y++K  +S NT  K A  L  +VDLE ++ L+ +L +   +++  +  L  +      L+ +  +LR +KK L+ +  K+  L  +I +++  L   ++   ++E+EERK   K+K+IN  +  LV E   +++       + + L ++   V  E    E ++    S L    + F  L         + K+L+  A+++     +  +P                +L  VF+ LP+T++EI+ L+ EE +  +C    NP +++ Y K + EI +L  EL+ K  EL + +  I ++ + WL PL+EL+ +INE++S+FF  M CAGEV L  +  +DY +YGI+I VKFR+  ++ ELT + QSGGERSVSTMLYL++LQEL +CPFR+VDEINQGMDP NERRVFE+VV T C+ NTSQYF ITPKLL +L Y+E+MT+L V NG +M+  N + L     R+R++
Sbjct:   49 VEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSRGMVEIELFRAS-GNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQRRIGNTRKMIEDLQNELKTTENCENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTINMKDNKNAKYIENHIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYLRELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAEEKYVVKTSFYSNKVISS-NTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETSKHLEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISEKNKLESDYMAASSQLRLTEQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQTQVPTIPNGHNSSLPMVFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEIEQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEPNTWNLKAFQRRRRRI 1095          
The following BLAST results are available for this feature:
BLAST of TCONS_00056983-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMC50.000e+036.89Structural maintenance of chromosomes protein 5 OS... [more]
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