TCONS_00057057-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057057-protein
Unique Name	TCONS_00057057-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	707

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057057-protein ID=TCONS_00057057-protein|Name=TCONS_00057057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
MTTSQGKLTVADISVIAVYIVSVIAVGVWSMFQSKRGTVSGYFLAGRFMT
FLPVGMSLFASNIGSEHLIGLSGSGAAAGISVGAFEFNALMFLQLLGFVF
LPVYISSGVFTLPEYIHKRFGGNRIRIFLAVLSLLLYIFTKISVNMYSGA
LFIQQSVGWNLYLSIFGLLALTGICTLTGGLATVIYLDTLMAFVMVGGAA
IMTFIGFKEIGWYSGLRAKYPNAMADEVLLGNTTCGIPRHDSFRLLRDPI
DSDLPWPGFMFGQTSASIWYWCADQVIVQRALAAKSLSHAQGGAVLAGYI
KILPMFIMVMPGMISRVLFPNEVGCVDPDKCMAICESRTGCTNIALPKLV
LEIMPSGLRGMMLAVMMAALMSDLTSIFNSASTIFTMDVYRSIRKQAGTR
ELMIVGRVFILILCVIGVLWVPVLKEFQGGQLFIYIQAVSAYLSPPIAAV
YLLAIFWQRSNEQGTFWAMMVGFAVGITRMILDFTYPAPSCSDAAQDTRP
PIIKKLLFHYFYVALLLFVLTLIVCVVISLLTEPPDEELIIRTTVWTKYD
SRIRSDELSEQNDMEENDQNEIRRRFTSTGSATDGATLEMKERQTTTKDS
DDNNVIVHQPRPSCCKRALYFICGLSEDPIEERKSMDEQKDHIREVISLK
QDPTAKKFLHINCILVLVVCIFLLVYFTVPDGGPTGPTIPLPYMPFVLNG
TRPYEWR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035948	XLOC_035948	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057057	TCONS_00057057	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 555..575
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 557..576
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 42..472 e-value: 1.7E-137 score: 456.8
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 42..472 e-value: 1.9E-133 score: 445.2
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 9..486 score: 76.449

Blast

[Close]

BLAST of TCONS_00057057-protein vs. Swiss-Prot (Human)
Match: SC5A3 (Sodium/myo-inositol cotransporter OS=Homo sapiens GN=SLC5A3 PE=1 SV=2)

HSP 1 Score: 659.833 bits (1701), Expect = 0.000e+0
Identity = 335/718 (46.66%), Postives = 481/718 (66.99%), Query Frame = 0

Query:    8 LTVADISVIAVYIVSVIAVGVWSMFQSKRGTVSGYFLAGRFMTFLPVGMSLFASNIGSEHLIGLSGSGAAAGISVGAFEFNALMFLQLLGFVFLPVYISSGVFTLPEYIHKRFGGNRIRIFLAVLSLLLYIFTKISVNMYSGALFIQQSVGWNLYLSIFGLLALTGICTLTGGLATVIYLDTLMAFVMVGGAAIMTFIGFKEIGWYSGLRAKYPNAMAD--EVLL-----GNTTCGI-PRHDSFRLLRDPIDSDLPWPGFMFGQTSASIWYWCADQVIVQRALAAKSLSHAQGGAVLAGYIKILPMFIMVMPGMISRVLFPNEVGCVDPDKCMAICESRTGCTNIALPKLVLEIMPSGLRGMMLAVMMAALMSDLTSIFNSASTIFTMDVYRSIRKQAGTRELMIVGRVFILILCVIGVLWVPVLKEFQGGQLFIYIQAVSAYLSPPIAAVYLLAIFWQRSNEQGTFWAMMVGFAVGITRMILDFTYPAPSCSDAAQDTRPPIIKKLLFHYFYVALLLFVLTLIVCVVISLLTEPPDEELIIRTTVWTKYDSRIRSD--------ELSEQNDMEENDQNEIRRRFTSTGSATDG----------------------ATLEMKERQTTTKDSDDNNVIV-----HQPRPSCCKRALYFI---CGLSEDPIEERKSMDEQKDHIREVISLKQDPTAKKFLHINCILVLVVCIFLLVYFTV 679
            L  ADI+++A+Y + V+ +G ++M++S R TVSGYFLAGR MT++ +G SLF SNIGSEH IGL+GSGAA+G +VGA+EFNAL+ LQLLG+VF+P+YI SGV+T+PEY+ KRFGG+RI+++ A LSL+LYIFTK+SV++YSGALFIQ+S+GWNLY+S+  L+ +T + T+TGGL  VIY DTL A +M+ GA  +  I   EIG +  ++ +Y  A  D   +LL        +C + P+ ++ ++LR+P D D+PWPGF+ GQT AS+WYWCADQVIVQR LAAK+++HA+G  ++AG++K+LPMFI+V+PGMISR+LF +++ C++P+ CM +C SR GC+NIA P+LV++++P GLRG+M+AVM+AALMSDL SIFNSASTIFT+DVY+ IRK A +RELMIVGR+F+  + VI + WVP++ E QGGQ+++YIQ V+ YL+PP+AA++LLAIFW+R NEQG F+  M GF +G  R+IL F Y AP C     D RP  IK +  HY YVA  LF +T ++ V++SLLT PP +E I  TT W+K +  ++ +        ++ E++ +  ++ NE        G + D                       A+L   E +T      +    +      +       R   FI   CG     + +R   D  ++    +  L++    K  L+I    V  + IF+ VYF++
Sbjct:    5 LDTADIAIVALYFILVMCIGFFAMWKSNRSTVSGYFLAGRSMTWVTIGASLFVSNIGSEHFIGLAGSGAASGFAVGAWEFNALLLLQLLGWVFIPIYIRSGVYTMPEYLSKRFGGHRIQVYFAALSLILYIFTKLSVDLYSGALFIQESLGWNLYVSVILLIGMTALLTVTGGLVAVIYTDTLQALLMIIGALTLMIISIMEIGGFEEVKRRYMLASPDVTSILLTYNLSNTNSCNVSPKKEALKMLRNPTDEDVPWPGFILGQTPASVWYWCADQVIVQRVLAAKNIAHAKGSTLMAGFLKLLPMFIIVVPGMISRILFTDDIACINPEHCMLVCGSRAGCSNIAYPRLVMKLVPVGLRGLMMAVMIAALMSDLDSIFNSASTIFTLDVYKLIRKSASSRELMIVGRIFVAFMVVISIAWVPIIVEMQGGQMYLYIQEVADYLTPPVAALFLLAIFWKRCNEQGAFYGGMAGFVLGAVRLILAFAYRAPECDQP--DNRPGFIKDI--HYMYVATGLFWVTGLITVIVSLLTPPPTKEQIRTTTFWSKKNLVVKENCSPKEEPYQMQEKSILRCSENNETINHIIPNGKSEDSIKGLQPEDVNLLVTCREEGNPVASLGHSEAETPVDAYSNGQAALMGEKERKKETDDGGRYWKFIDWFCGFKSKSLSKRSLRDLMEEEAVCLQMLEETRQVKVILNIGLFAVCSLGIFMFVYFSL 718

The following BLAST results are available for this feature:

BLAST of TCONS_00057057-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A3	0.000e+0	46.66	Sodium/myo-inositol cotransporter OS=Homo sapiens ...	[more]

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TCONS_00057057-protein (polypeptide) - C. hemisphaerica