TCONS_00057164-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057164-protein
Unique NameTCONS_00057164-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057164-protein ID=TCONS_00057164-protein|Name=TCONS_00057164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
LINVACAAVLTHSEMASSKIVISDVIVKVGGKNFIYLLPFMVTVCVIPAL
SAVFYNLPRLIMSSAREGQFPSMFSLIHKERRTPVPAILFLAFITGLLTL
CNLSLQTMLQCCNISIWFEYAFAISTILVNRWKRPELKRTYKTWITTPII
MMIVPIVLFVLSFNEKPISSVIILIAMSLSVPVFYVFLHKRWFQSSLPNT
AISLWLTERLPLVKCEFEGEHVD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036023XLOC_036023Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057164TCONS_00057164Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002293Amino acid/polyamine transporter IPFAMPF13520AA_permease_2coord: 1..163
e-value: 9.3E-15
score: 54.3

Blast
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BLAST of TCONS_00057164-protein vs. Swiss-Prot (Human)
Match: LAT2 (Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.224e-17
Identity = 53/187 (28.34%), Postives = 93/187 (49.73%), Query Frame = 0 
Query:    3 NVACAAVLTHSEMASSKIVISDVIVKVGGKNFIYLLPFMVTVCVIPALSAVFYNLPRLIMSSAREGQFPSMFSLIHKERRTPVPAILFLAFITGLLTLCNLSLQTMLQCCNISIWFEYAFAISTILVNRWKRPELKRTYKTWITTPIIMMIVPIVLFVLSFNEKPISSVIILIAMSLSVPVFYVFLH 189
            NVA    ++  E+ +S  V      K+ G    +++P  V +     ++   +   RL  + AREG  PS+ ++IH +R TP+PA+LF   I+ LL L    + T++       +  Y   ++  +V RWK+P++ R  K  +  PII ++    L V S   +P+   I L  M   VPV+++ ++
Sbjct:  284 NVAYVTAMSPQELLASNAVAVTFGEKLLGV-MAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTC-ISTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVPVYFLGVY 468
The following BLAST results are available for this feature:
BLAST of TCONS_00057164-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAT22.224e-1728.34Large neutral amino acids transporter small subuni... [more]
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