TCONS_00057228-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057228-protein
Unique NameTCONS_00057228-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1484

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057228-protein ID=TCONS_00057228-protein|Name=TCONS_00057228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1484bp
MSEWARFFPLDATKADNTSVKAKSDSLPLLVEIILGESKMFYPSTLVLIQ
SQSTGNLLKGKDKELQVNPTKIVDQVWKKLKKKDEPSSPSKQLWEFKDHT
IPAGCKCCSNSNVSRVKSNVGSNPFNTSYLYATNQNNVSQNKTKKEPTQT
AQTNFHQRPIKVEKTQGRITPSLTGRVTPSMSGSYKQPPSQSSLERPASV
TSTKALGSVESQLTPTVKVESQSLSTTTNSLPTLSTNTTQKTRNFQVKQK
NKYESKLMYSIPRSTHLSRPMLKTGTLEIRTSVSQSDEFKIKTEEELMSP
NSVFGDDIASNSQLGQLSVDISCSDGSNKSIKQEKPAVPVKRGPGRPKGR
RNSTLSPSGTVNEEELLSPNTRRQSARQMLRGSRKRDSPTQSPKPDSPPS
GPGRPKKSRRSTRAGEKTPNTPKSEPVFTFGNSSVKSVSSVSSPTTPFLP
PPSVKPSSNSLTSQKDIEVSEADLMHLFDDEEDDDHTAKMPHPTSQHNAT
SVLSPFNASDEQHHITSSTPMITTTTLTSHDLAKMFPTPPSLEEPITHQT
MSPTNVVESHIMTAAHSTILLSPAESSRGGSMEDIHNLRSPGVDIYPTFQ
LPIFETMPMPEDFKPVRLPSEKLPRLKGKYQKYIPSWEQNPPLLSRRPSN
NRTTQASNNVEITLRKSSSSVFDSKLSLPLISPALSQRTFSDTTPSLSGM
PIDHQSLLLNLRLADSFMNWINKNVAGTDNSNAFSIQDKTFKIFNIYQDL
LWKNTSFATDHHPLFPEDEPMERTLDMVKKQVADLQPSKFPFSTDLIEIL
LKQFSSSFSIKYFYKLLSQYYVNNDAQQTESGNLKRNALCDEKQGLQQRK
LLHDLKPVLESAFQKPLNKNSFDQTRIEGPLTFTSLNSNKNVLSSIPPST
NGLLFSYDSDSFSVSPDAVKHWQRLFLEPLGGQRNVEYIVLLPDADVVVN
GMKLFFKELNSLYESLNLGSHVPIVKELREGFLRISQKSVSPCASEVVDP
WFDQSNSNLMAKMKVVAQFCKRTLGSYLTSVFDRNTNKRSAMSPTTPNSN
GNLGFSSISSTSLTVSLEESLVKRERETQPFIVLYMVDPFNVESQLNNYP
HLWSYVGLMKSLLEMKNDLNDYLKENLLFEIIPLEQILNLTSKTGQPGGP
HNSELKELALSVYSKCRPNALSYISKIDKCMTGFGVCHIRESLVHRRKRE
NNLPTTVYMPPYILSPSPKYLNHELKNVTKAKEVFALEKGTNILFCCYCL
SSDKQWMFVTCTDQLGELNETTMIRIAYPKRKKNKGLIWSVSLNKLWQYL
NGVLSFSICSWRIVLTKYGDVGVHELKELKAIIQKNIELLVPEGKAGRPL
SPNENCSSCSNDLTKKGNNLFKSISFCTVKRDNRIGFVKTKKVRNTNVVN
CRIYVMPSHKLLSSLHKSVPPLNGMGGQSLLSGVNLGGNSQPNDLLGGDP
TSLLNTSFDEDNESSFIXETLNRTTCWVAIQRHF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036052XLOC_036052Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057228TCONS_00057228Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009401Mediator_Med13
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009401Mediator complex, subunit Med13PFAMPF06333Med13_Ccoord: 1083..1382
e-value: 4.8E-39
score: 134.3

Blast
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BLAST of TCONS_00057228-protein vs. Swiss-Prot (Human)
Match: MD13L (Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.812e-31
Identity = 91/306 (29.74%), Postives = 157/306 (51.31%), Query Frame = 0 
Query: 1049 SNGNLGFSS-----ISSTSLTVSLEESLVKRER-------------ETQPFIVLYMVDPFNVESQLNNYPHLWSYVGLMKSLLEMKNDLNDYLKENLLFEIIPLEQILNLTSKTGQPGGPHNSELKELALSVYSKCRPNALSYISKIDKCMTGFGVCHIRESLVHRRKRENNLPTTVYMPPYILSPSPKYLNHELKN-VTKAKEVFA-LEKGTNILFCCYCLSSDKQWMFVTCTDQLGELNETTMIRIAYPKR-KKNKGLIWSVSLNKLWQYLNGVLSFSICSWRIVLTKYGDVGVHELKELKAII 1333
            + GN+G         SS+  +   +ES+ +RER                P +V+YMVDPF   ++ ++    +  + LM+   EM ++L ++++ + + +I+P + +L  T K  Q    +   LK +A SVY +CR    + I    K +TGFG     E  +   +R +  P  +Y PP+IL+P        +K+  T+  E F    +  N+LF  YCLS D++W+  +CTD  GEL ET ++ IA P R +++K     + L KLW++  G++  +   WR+V+ + G +G  ELK+   ++
Sbjct: 1626 TQGNIGCGGDTDPGQSSSQPSQDGQESVTERERIGIPTEPDSADSHAHPPAVVIYMVDPFTYAAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQYMLQ-TMKDEQVF--YIQYLKSMAFSVYCQCRRPLPTQIHI--KSLTGFGPAASIEMTLKNPERPS--PIQLYSPPFILAP--------IKDKQTELGETFGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCVVNIALPNRSRRSKVSARKIGLQKLWEWCIGIVQMTSLPWRVVIGRLGRLGHGELKDWSILL 1916

HSP 2 Score: 124.02 bits (310), Expect = 3.996e-28
Identity = 65/196 (33.16%), Postives = 110/196 (56.12%), Query Frame = 0 
Query:  850 KLLHDLKPVLESAFQKPLNKNSFDQTR-IEGPLTFTSLN--SNKNVLSS------IPPSTNGLLFSYDSDSFSVSPDAVKHWQRLFLEPLGGQRNVEYIVLLPDADVVVNGMKLFFKELNSLYESLNLGSHVPIVKELREGFLRISQKSVSPCASEVVDPWFDQ-----SNSNLMAKMKVVAQFCKRTLGSYLTSV 1031
            ++L  L+P L+ A QK     +++  + ++GPLT+   +  + +    S      +P  T  LL  YD D  ++SP ++  W+RL L+P GG R+V YIV+ P+ + ++ G K FF++L+++YE   LG H PI K LR+G +R+ +        E+V  WF+Q      N N  +++K+ AQ C+  L  YL ++
Sbjct: 1325 RMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPLPIPT--LLVGYDKDFLTISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTDELVSEWFNQPWSGEENDN-HSRLKLYAQVCRHHLAPYLATL 1517
The following BLAST results are available for this feature:
BLAST of TCONS_00057228-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MD13L4.812e-3129.74Mediator of RNA polymerase II transcription subuni... [more]
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