TCONS_00057244-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057244-protein
Unique NameTCONS_00057244-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length147

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057244-protein ID=TCONS_00057244-protein|Name=TCONS_00057244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MVDVAYDNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDE
HNILKKVLEKKEQIQKQEQARIGNLVKKLDDMRSQVLGDGTTTCLICGTK
AGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036060XLOC_036060Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057244TCONS_00057244Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027413GROEL-like_equatorial
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027413GroEL-like equatorial domainGENE3D1.10.560.10coord: 24..98
e-value: 3.8E-4
score: 19.0
IPR011011Zinc finger, FYVE/PHD-typePFAMPF02318FYVE_2coord: 45..146
e-value: 5.3E-19
score: 68.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 45..146
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 99..147
e-value: 0.0017
score: 17.8
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 88..147
score: 9.299

Blast
[Close]
BLAST of TCONS_00057244-protein vs. Swiss-Prot (Human)
Match: RPH3L (Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.356e-29
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 0 
Query:    1 MVDVAY-DNNDRWNIPDDRQLALRGRLQTGWSSYQQDVFSASKKHSLTTDEHNILKKVLEKKEQIQKQEQARIGNLVKKLDDMRSQVLGDGTTTCLICGTKAGLLKDQLRYCFKCSKMVCPKCSIETKLSLEYSGKVYSCVLCFEERQ 147
            M D  +   ND+W  P+DRQLALR +LQTGWS +        +K  L+  E   + +V+++ E++   EQ RIG LV++L+ MR  V+G+G + CL+CG   G L     +C  C K VC KC IE     +    ++ C +C E+R+
Sbjct:    1 MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRP--LWLCKICSEQRE 146
The following BLAST results are available for this feature:
BLAST of TCONS_00057244-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPH3L1.356e-2937.84Rab effector Noc2 OS=Homo sapiens GN=RPH3AL PE=1 S... [more]
back to top