TCONS_00057253-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057253-protein
Unique Name	TCONS_00057253-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	291

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057253-protein ID=TCONS_00057253-protein|Name=TCONS_00057253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
STTCILAGLVMYAVYHDCDPRHDKKINSNDQILAYFLVSNLSHLKGVPGI
FMASLFSGALSTASSGLNSLAAITFEDIVKFRLPAEYQDKSVKYTKYIAC
LYGLVVLGGSFIVANAGSMVTQMTVSIQGIVAAPYFGMFVMGIFFPWANT
KGAVSGCLFGLIFTGFICVGAIVYPPNKDVLQTSIRGCSSFNTTVANTTD
GVFVNPFKPHEDPIASLFSVSYLWYATIGLFSSIIVGCIVSLLTGKEKNK
ISKELLFDYTPLKRCFCFTGSSRTVDINTRSEIHMENVEKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036066	XLOC_036066	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057253	TCONS_00057253	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 26..160 e-value: 2.4E-10 score: 39.8
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 1..174 score: 18.176

Blast

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BLAST of TCONS_00057253-protein vs. Swiss-Prot (Human)
Match: SC5A8 (Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.194e-42
Identity = 89/266 (33.46%), Postives = 159/266 (59.77%), Query Frame = 0

Query:    2 TTCILAGLVMYAVYHDCDPRHDKKINSNDQILAYFLVSNLSHLKGVPGIFMASLFSGALSTASSGLNSLAAITFEDIVK--FRLPAEYQDKSVKY-TKYIACLYGLVVLGGSFIVANAGSMVTQMTVSIQGIVAAPYFGMFVMGIFFPWANTKGAVSGCLFGLIFTGFICVGAIVYPPNKDV---LQTSIRGC-SSFN-TTVANTTDGVFVNP----FKPHEDPIA-SLFSVSYLWYATIGLFSSIIVGCIVSLLTGKEKNKISKE 254
            T  +  GL +Y+ YHDCDP   KK+++ DQ++ Y ++  L    G+PG+F+A  +SG LST SS +N+LAA+T ED++K  FR      ++S+ + ++ ++ +YG + +G + + +  G+++ Q  +S+ G+V  P  G+F +GI  P+AN+ GA+ G + G   + ++ +GA +YPP  +    L   I+GC S++N T +  TT+  F       +     P+  + +S+SYL+++T+G   +++VG +VSL TG  K  +   
Sbjct:  292 TCSVFCGLALYSRYHDCDPWTAKKVSAPDQLMPYLVLDILQDYPGLPGLFVACAYSGTLSTVSSSINALAAVTVEDLIKPYFR---SLSERSLSWISQGMSVVYGALCIGMAALASLMGALL-QAALSVFGMVGGPLMGLFALGILVPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGCNSTYNETNLMTTTEMPFTTSVFQIYNVQRTPLMDNWYSLSYLYFSTVGTLVTLLVGILVSLSTGGRKQNLDPR 553

The following BLAST results are available for this feature:

BLAST of TCONS_00057253-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5A8	1.194e-42	33.46	Sodium-coupled monocarboxylate transporter 1 OS=Ho...	[more]

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TCONS_00057253-protein (polypeptide) - C. hemisphaerica