TCONS_00057267-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057267-protein
Unique Name	TCONS_00057267-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1579

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057267-protein ID=TCONS_00057267-protein|Name=TCONS_00057267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1579bp
MNMDKVKMDGNKPRKKHIAVQIDNDHFYHINGIKVVFPVKAYPSQISIMS
KIISGIEQKKNCLLESPTGSGKSLALLCACLAWQKSQKEKIERMESDFLK
CEMNDEVINITDDDPLPKHNKIEILDTKTPELKKPVVVTKDPEKGNKEDK
DDDDDDFLPSAKKTRKSLSRSGKKKPKSKQVLDDIEKPNQNDMKPSENTW
KMEMKKLKHLSSEDGAYTSSSKDGVKNSKEKIQDSDRLPKIYFGTRTHKQ
IGQIIRELRKTVYKDARMGILGSREYLCIHPAVSKSRDKNEECKNLIKGY
QGKSCKFHSNYHKVTARPKFNKAWDVEDLVTAGKKVKGCPYYASRDLCKS
ADVIFCPYNYLIDPLIRNQMMINLKDQIIVLDEAHNIEDSAREAGSVQLT
TVQLDDTVKDLSDMISCNISVNMHNCLLNLCNGILGWINKTKDSLDKRGF
ENEAKVWTGKEMVKMLAEDPAKMTSHTLTLYQNAFEKLVSEEQDAFNRED
DDTPRINTKSLATLSSIIFILEKLFDQTKDFAEGYRVGLCRTTVMKPVIV
TAPGGWLRKSNRSEKVWTYKLNLWCLNPAVVFSQVGEMARTIVLTSGTLS
PMKSFSSELGVEFPISLEANHVIDDSQVLVGNIGSGPTNITIKANFQNSE
TFAFQDEVGKAVLQICKVVPKGVLCFLPSYSMMEKLIKRWKTTDLWNTLC
LCKTVHSEPRGSDKADFDEILGNYYASVSANYKIEDGSDLNGALLFAVCR
GKVSEGLDFSDDNARAVIVVGIPFPNVKDIQVELKRKYNNANVSRGLLNG
GEWYEMQAFRALNQAVGRCIRHRNDWGAIIMIDERFQKSPKYRDGLSKWV
RGRFQTFRDFQFCLTSITQFVENQTNPKLKRLETSEKVTSAKHPIGYSKE
KKNSASKESIMQSEISTGNVSPRFETECCISKACEREMTPAHTGGMGMNN
TVNRVNSIGSFLKKRPSGDMRTQTEDEQNTHLQDCKDLESDIRTKQKLEQ
RLSRSLRNKETLSCTKMSSVKNDSKENKQKEDDCLRRTSLDYVARLSIDE
FKTSLPEHTTNNQTASSRMSKENLPETRLSNQRKSLNIASRFVYPESKQN
NPIKPVDHSDQQEQKHQKCSDKLKTSEKNFPKSIEKIEKPLYGEPNHQKC
SDKLKTRENNGKLGKPSEKQNDNFEMSFEVCDDEELSMISTQVLKTGSDV
KKELPALNSIVHNISSTFKKRSSVVKDLKQSAPFNQSKKDIQCFDQLDSS
MNFLDQSNDSLLDADSTTCDFQPTVKKATVESPNVDLFDFDFEEDQQNFS
PPLTNQKQSAKPVSQSKSNALNLSSTSTNRNETLRTRSQSNKTKPKITID
DDSPTRPLNENSNNKKIFKFVPSSSKKRLSDEIDQSIAKKDKIDQSAYPD
VNETKQLEISMSKTLGMVKRRTKGKKIGRNLRRTTRKGSVDNILKDENNC
EKEQAMVYDIVACKNCGLLLHSEKSLFSVPYDMPQGMTSSTHVSVFKVQP
TDSLEEKITRELPGSEGSKAKGFNCNSYYDRASDCVYIPLYCAGCRSNTP
SLNELVGFQVISYAEEKETETFLFESNPS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036075	XLOC_036075	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057267	TCONS_00057267	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006555	ATP-dep_Helicase_C
IPR006554	Helicase-like_DEXD_c2
IPR013020	DNA_helicase_DNA-repair_Rad3
IPR010614	DEAD_2
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008026	ATP-dependent helicase activity
GO:0005524	ATP binding
GO:0004003	ATP-dependent DNA helicase activity
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 995..1015
None	No IPR available	GENE3D	3.40.50.300		coord: 38..621 e-value: 3.7E-28 score: 97.7
None	No IPR available	GENE3D	3.40.50.300		coord: 643..916 e-value: 1.9E-5 score: 23.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1143..1171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 896..917
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1054..1128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1296..1366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 961..1033
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..231
IPR006555	ATP-dependent helicase, C-terminal	SMART	SM00491	Cxpdneu3	coord: 680..838 e-value: 3.0E-45 score: 166.3
IPR006555	ATP-dependent helicase, C-terminal	PFAM	PF13307	Helicase_C_2	coord: 663..851 e-value: 5.4E-59 score: 199.1
IPR006554	Helicase-like, DEXD box c2 type	SMART	SM00488	deadxpd	coord: 33..425 e-value: 1.9E-51 score: 186.9
IPR013020	DNA helicase (DNA repair), Rad3 type	TIGRFAM	TIGR00604	TIGR00604	coord: 235..855 e-value: 1.3E-120 score: 402.1
IPR010614	DEAD2	PFAM	PF06733	DEAD_2	coord: 243..404 e-value: 8.1E-51 score: 172.0
IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	PROSITE	PS51193	HELICASE_ATP_BIND_2	coord: 31..431 score: 26.222
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 351..392 coord: 20..87 coord: 239..265
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 588..602 coord: 341..405 coord: 637..832

Blast

[Close]

BLAST of TCONS_00057267-protein vs. Swiss-Prot (Human)
Match: FANCJ (Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1)

HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0
Identity = 398/945 (42.12%), Postives = 565/945 (59.79%), Query Frame = 0

Query:   28 YHINGIKVVFPVKAYPSQISIMSKIISGIEQKKNCLLESPTGSGKSLALLCACLAWQK-----------SQKEKIER------MESDFLKCEMNDEVINITDDDPLPKHNKIEILDTKTPELKKPVVVTKDPEKGNKEDKDDDDDDFLPSAKKTRKSLSRSGKKKPKSKQVLDDIEKPNQNDMKPSENTWKME--MKKLKHLSSED----------GAYTSSSKDGVKNSKEKIQDSDRLPKIYFGTRTHKQIGQIIRELRKTVYKDARMGILGSREYLCIHPAVSKSRDKNEECKNLIKGYQGKSCKFHSNYHKVTARPKFN------KAWDVEDLVTAGKKVKGCPYYASRDLCKSADVIFCPYNYLIDPLIRNQMMINLKDQIIVLDEAHNIEDSAREAGSVQLTTVQLDDTVKDLSDMISCNISVNMHNCLLNLCNGILGWINKTKDSLDKRGFENEAKVWTGKEMVKMLAEDPAKMTSHTLTLYQNAFEKLVSEEQDA---FNREDD-DTPRINTKSLATLSSIIFILEKLFDQTKDFAEGYRVGLCRT-TVMKPVIVTAPGGWL----RKSNRSEKVWTYKLNLWCLNPAVVFSQVGEMARTIVLTSGTLSPMKSFSSELGVEFPISLEANHVIDDSQVLVGNIGSGPTNITIKANFQNSETFAFQDEVGKAVLQICKVVPKGVLCFLPSYSMMEKLIKRWKTTDLWNTLCLCKTVHSEPRGSDKADFDEILGNYYASVSANYKIEDGSDLNGALLFAVCRGKVSEGLDFSDDNARAVIVVGIPFPNVKDIQVELKRKYNNANVS-RGLLNGGEWYEMQAFRALNQAVGRCIRHRNDWGAIIMIDERFQKSP-KYRDGLSKWVRGRFQTFRDFQFCLTSITQF-----------VENQTNPKLKRLETSEKVTSAKHPI-GYSKEKKNSASKESIMQSE 914
            Y I G+K+ FP KAYPSQ+++M+ I+ G+  K++CLLESPTGSGKSLALLC+ LAWQ+           S+K +++          DF   +MN       +    P   +     T     +K  +  K   K       D++DDF    K+ R  L  + + +   K+     E  N +    S  T K+   ++K+   S +                +S++     K+      ++PKIYFGTRTHKQI QI RELR+T Y    M IL SR++ C+HP V  + ++NE+C  L+ G  GKSC F+   HK++ +          KAWD+E+LV+ GKK+K CPYY +R+L + AD+IFCPYNYL+D  IR  M +NLK+Q+++LDEAHNIED ARE+ S  +T VQL     +L  M++ NI    H  L  +C  ++ W+    + L +R +E+  K+W+G EM  +L      +T+ T  + Q  F  ++ +E+     + +E+  + P I+  +   L  +  +L+ LF Q   FA+ Y++ + +T +    + ++   G L     K    +K   + LN WCLNPAV FS +    +TIVLTSGTLSPMKSFSSELGV F I LEANH+I +SQV VG IGSGP    + A FQN+ETF FQDEVG  +L +C+ V +G+LCFLPSY ++EKL +RW +T LW+ L L KTV  EP+G +K +FDE+L  YY ++   YK E     +GALL AVCRGKVSEGLDFSDDNARAVI +GIPFPNVKD+QVELKR+YN+ +   RGLL G +WYE+QA+RALNQA+GRCIRHRNDWGA+I++D+RF+ +P +Y  GLSKWVR + Q    F+  L S+ +F           ++++TN  ++  E++ +VTS K+    Y  E  +  S E+ ++ E
Sbjct:    8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLSGKPADEGVSEKAEVQLSCCCACHSKDFTNNDMNQGTSRHFNYPSTPPSERNGTSSTCQDSPEKTTLAAKLSAKKQASIYRDENDDFQVEKKRIR-PLETTQQIR---KRHCFGTEVHNLDAKVDSGKTVKLNSPLEKINSFSPQKPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEM--LLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAI--KYKGEK----DGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTN--IQDNESTLEVTSLKYSTPPYLLEAASHLSPENFVEDE 938

The following BLAST results are available for this feature:

BLAST of TCONS_00057267-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057267-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FANCJ	0.000e+0	42.12	Fanconi anemia group J protein OS=Homo sapiens GN=...	[more]

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TCONS_00057267-protein (polypeptide) - C. hemisphaerica