TCONS_00057283-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057283-protein
Unique NameTCONS_00057283-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057283-protein ID=TCONS_00057283-protein|Name=TCONS_00057283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MESNKSEYSERIEALELQELTAQNGGASLEVYKELLLLYLMEFDLINAKF
LWKRIPLTVKLDNELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPL
LKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVL
HSDTKLVKVDCQPDESNTTTANTQDKLDSSTLTQSLHRLTDYVSFLEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036088XLOC_036088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057283TCONS_00057283Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR033464CSN8_PSD8_EIF3K
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 99..189
e-value: 8.2E-9
score: 34.9
IPR033464CSN8/PSMD8/EIF3KPFAMPF10075CSN8_PSD8_EIF3Kcoord: 29..159
e-value: 2.7E-27
score: 95.4

Blast
[Close]
BLAST of TCONS_00057283-protein vs. Swiss-Prot (Human)
Match: CSN8 (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.889e-34
Identity = 69/205 (33.66%), Postives = 107/205 (52.20%), Query Frame = 0 
Query:    1 MESNKSEYSERIEALELQELTAQNGGASLEVYKELLLLYLMEFDLINAKFLWKRIPLTVKLDN-ELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPLLKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVLHSDTKLV----KVDCQPDESNTTTANTQDKLDSSTLT--QSLHRLTDYVSFLEN 198
            M  +   + + ++  E QEL A  G A+  VY +LL LYL+  D+ NA++LWKRIP  +K  N EL  IW +GQ +W+R+FP +Y  I +H+WSE  +  +  L    + R   L+  AY+ +  +D +  +G+  E+ +   +  + W   S T++V     V    D S        +      +   Q L RLTDYV+FLEN
Sbjct:    6 MAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGIL-EQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
The following BLAST results are available for this feature:
BLAST of TCONS_00057283-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN84.889e-3433.66COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
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