Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00057283-protein ID=TCONS_00057283-protein|Name=TCONS_00057283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp MESNKSEYSERIEALELQELTAQNGGASLEVYKELLLLYLMEFDLINAKF LWKRIPLTVKLDNELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPL LKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVL HSDTKLVKVDCQPDESNTTTANTQDKLDSSTLTQSLHRLTDYVSFLEN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 Expect = 8.2E-9 / Score = 34.9 Expect = 2.7E-27 / Score = 95.4 Sequence G3DSA:1.10.10.10 PF10075
IPR Term IPR Description Source Source Term Source Description Alignment
IPR011991 Winged helix-turn-helix DNA-binding domain GENE3D 1.10.10.10 coord: 99..189 e-value: 8.2E-9 score: 34.9
IPR033464 CSN8/PSMD8/EIF3K PFAM PF10075 CSN8_PSD8_EIF3K coord: 29..159 e-value: 2.7E-27 score: 95.4
Blast
BLAST of TCONS_00057283-protein vs. Swiss-Prot (Human)
Match:
CSN8 (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)
HSP 1 Score: 119.783 bits (299), Expect = 4.889e-34
Identity = 69/205 (33.66%), Postives = 107/205 (52.20%), Query Frame = 0
Query: 1 MESNKSEYSERIEALELQELTAQNGGASLEVYKELLLLYLMEFDLINAKFLWKRIPLTVKLDN-ELTTIWKIGQCLWRREFPAVYEIIKSHEWSEAFKEPLLKLYSILQNRMTCLIENAYSLVKVEDLSQALGISEEQQLLDFINNRKWVLHSDTKLV----KVDCQPDESNTTTANTQDKLDSSTLT--QSLHRLTDYVSFLEN 198
M + + + ++ E QEL A G A+ VY +LL LYL+ D+ NA++LWKRIP +K N EL IW +GQ +W+R+FP +Y I +H+WSE + + L + R L+ AY+ + +D + +G+ E+ + + + W S T++V V D S + + Q L RLTDYV+FLEN
Sbjct: 6 MAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGIL-EQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
The following BLAST results are available for this feature:
BLAST of TCONS_00057283-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M E S N K S E Y S E R I E A L E L Q E L T A Q N G G A S L E V Y K E L L L L Y L M E F D L I N A K F L W K R I P L T V K L D N E L T T I W K I G Q C L W R R E F P A V Y E I I K S H E W S E A F K E P L L K L Y S I L Q N R M T C L I E N A Y S L V K V E D L S Q A L G I S E E Q Q L L D F I N N R K W V L H S D T K L V K V D C Q P D E S N T T T A N T Q D K L D S S T L T Q S L H R L T D Y V S F L E N 20 40 60 80 100 120 140 160 180 Expect = 4.89e-34 / Id = 33.66 Sequence CSN8
Match Name E-value Identity Description
CSN8 4.889e-34 33.66 COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
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