TCONS_00057296-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057296-protein
Unique NameTCONS_00057296-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057296-protein ID=TCONS_00057296-protein|Name=TCONS_00057296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
KTLIIFTIIFGHHVITSFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIP
RDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHN
LIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTP
SLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKD
VDVHLGRSYLCCCSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTC
LRKLTPPTTSIPDNPESDISKPTDAVVQTTPITTTPSEPEPVRPATPRKS
SICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKY
DFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTF
QGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQ
TLIGLGSLETLTVSLHLIEVLRSDVFDGLPADVTIQTDMYDMAICCCTTA
LAIHKTKSLAKYNTQCNLETCSNDKDPVCKMSFSSTTEVITSDKSTAINL
ESTFESTIRTTERSTIDYLQRSLFKSKDTKEEEEKDNEEKEEEEDADADV
AGSDKKEPISSDDSSPIQPSSPLITPQTIDSTTNLNDYIQRSVRFLSSQS
SYFQSSPSLSSMFYDDLHTQTPSRSTTKVSTNQYLNSTINSTSLKNFNAS
DNLNPTINSTSLNISFNTSENTTSSHSINTSSTINSSWSQQGNDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036101XLOC_036101Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057296TCONS_00057296Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000372LRRNT
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 573..596
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 718..745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 576..630
IPR000372Leucine-rich repeat N-terminal domainSMARTSM00013lrrnt1coord: 302..336
e-value: 0.47
score: 19.5
coord: 19..55
e-value: 3.2
score: 13.6
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 355..378
e-value: 0.049
score: 22.8
coord: 54..73
e-value: 150.0
score: 3.7
coord: 455..478
e-value: 58.0
score: 7.0
coord: 149..172
e-value: 77.0
score: 6.0
coord: 74..97
e-value: 0.0084
score: 25.3
coord: 173..196
e-value: 11.0
score: 13.0
coord: 379..402
e-value: 0.03
score: 23.5
coord: 98..121
e-value: 0.73
score: 18.9
coord: 431..454
e-value: 1.2
score: 18.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 76..131
e-value: 1.6E-12
score: 46.9
coord: 356..413
e-value: 1.1E-14
score: 53.8
coord: 150..197
e-value: 6.9E-8
score: 32.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 76..97
score: 7.804
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 100..121
score: 6.788
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 433..454
score: 5.348
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 175..196
score: 7.481
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 405..427
score: 4.647
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 52..75
score: 5.948
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 381..402
score: 7.373
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 357..378
score: 7.35
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 151..172
score: 5.294
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 333..354
score: 5.44
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 18..269
e-value: 2.1E-35
score: 121.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 298..608
e-value: 2.1E-33
score: 114.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 24..199
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 304..479

Blast
[Close]
BLAST of TCONS_00057296-protein vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.447e-33
Identity = 130/455 (28.57%), Postives = 191/455 (41.98%), Query Frame = 0 
Query:   17 SFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIPRDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHNLIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTPSLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKDVDVHLGRSYLCC-CSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTCLRKLTPPTTSIPDNPESDISKPTDAVVQTTPITTTPSEPEPVRPATPRKSSICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKYDFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISP------------------------HTFQGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRC 446
            + +CP +CTC  +  +V C G    L ++P+ IPR+ E L L+ NNI +I++ D AGL NLR L+L  N ++ I+  AF DL  L  L L+KN L  + +  F    +L  L LSE     +P      F     +++L L  N+   I +  F  L  L+ LT++ N I++I   +F+H  K   + L  ++L C C  A   + L  + +V                   T C+  +     ++ D             VQ           EP  P+    S  CP  C C N+  D  C    L  +P N+P    ++ L  N I  I    F     LK + +  N I  +    F+ L +LTSL L  N I  I                          +TFQ L+NLN LSL +      L  I  G F  L  +++L L  N F C
Sbjct:   31 AVACPTKCTC--SAASVDCHGLG--LRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIP---RKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVG----------------QFTLCMAPVHLRGFNVAD-------------VQKKEYVCPAPHSEP--PSCNANSISCPSPCTCSNNIVD--CRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYD----NKLQTISKGLFAPLQSIQTLHLAQNPFVC 441

HSP 2 Score: 83.5741 bits (205), Expect = 2.629e-16
Identity = 58/184 (31.52%), Postives = 90/184 (48.91%), Query Frame = 0 
Query:  303 CPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKYDFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTFQGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQTLIGLGSLETLTVSLHLIEVLRSDVFDGLPADVTIQ 486
            CP +C C      V CH   L AVP  IP   E+L L+ N ITRI K DF  L  L+ L+L +N +  ++ G F++L  L  L L  N +  +    FQ    L  L LS    +  +  I   +F+ + ++++LQL+ N   C+       L  LE LT++ + I  +    F+ +P   T++
Sbjct:   34 CPTKCTC--SAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLS----ENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLR 211
The following BLAST results are available for this feature:
BLAST of TCONS_00057296-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT32.447e-3328.57Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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