TCONS_00057296-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057296-protein
Unique NameTCONS_00057296-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057296-protein ID=TCONS_00057296-protein|Name=TCONS_00057296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
KTLIIFTIIFGHHVITSFSCPIECTCDQTTKTVTCIGKEKPLNSIPKDIP
RDTEELYLNNNNIQQISRADLAGLNNLRKLYLHKNHIAHIDEYAFTDLHN
LIELNLSKNYLSYITQYTFVGLWRLKSLWLSEIHSHIVPCIDDFVFTQTP
SLEDLFLTKNYFHFISNNLFSGLSKLKYLTISLNQINKINSLAFSHFSKD
VDVHLGRSYLCCCSTAAAIESLMIKPSVKCTIKDCYNAEGICNRPYDTTC
LRKLTPPTTSIPDNPESDISKPTDAVVQTTPITTTPSEPEPVRPATPRKS
SICPEECKCYNDFKDVLCHQNFLSAVPGNIPNETEKLILNDNLITRIRKY
DFYDLPYLKELYLHNNNIERLDDGCFEELGNLTSLFLLNNHIDHISPHTF
QGLENLNHLSLSNLNTKRTLINIEHGSFQMLGELESLQLNGNRFRCLSQQ
TLIGLGSLETLTVSLHLIEVLRSDVFDGLPADVTIQTDMYDMAICCCTTA
LAIHKTKSLAKYNTQCNLETCSNDKDPVCKMSFSSTTEVITSDKSTAINL
ESTFESTIRTTERSTIDYLQRSLFKSKDTKEEEEKDNEEKEEEEDADADV
AGSDKKEPISSDDSSPIQPSSPLITPQTIDSTTNLNDYIQRSVRFLSSQS
SYFQSSPSLSSMFYDDLHTQTPSRSTTKVSTNQYLNSTINSTSLKNFNAS
DNLNPTINSTSLNISFNTSENTTSSHSINTSSTINSSWSQQGNDT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036101XLOC_036101Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057296TCONS_00057296Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000372LRRNT
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
100200300400500600700Score = Expect = 2.1E-35 / Score = 121.3Expect = 2.1E-33 / Score = 114.6Score = Score = SequenceCoilmobidb-litemobidb-liteSM00013SM00369PF13855PS51450PS51450PS51450PS51450PS51450PS51450PS51450PS51450PS51450PS51450G3DSA:3.80.10.10G3DSA:3.80.10.10SSF52058SSF52058
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 573..596
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 718..745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 576..630
IPR000372Leucine-rich repeat N-terminal domainSMARTSM00013lrrnt1coord: 302..336
e-value: 0.47
score: 19.5
coord: 19..55
e-value: 3.2
score: 13.6
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 355..378
e-value: 0.049
score: 22.8
coord: 54..73
e-value: 150.0
score: 3.7
coord: 455..478
e-value: 58.0
score: 7.0
coord: 149..172
e-value: 77.0
score: 6.0
coord: 74..97
e-value: 0.0084
score: 25.3
coord: 173..196
e-value: 11.0
score: 13.0
coord: 379..402
e-value: 0.03
score: 23.5
coord: 98..121
e-value: 0.73
score: 18.9
coord: 431..454
e-value: 1.2
score: 18.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 76..131
e-value: 1.6E-12
score: 46.9
coord: 356..413
e-value: 1.1E-14
score: 53.8
coord: 150..197
e-value: 6.9E-8
score: 32.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 76..97
score: 7.804
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 100..121
score: 6.788
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 433..454
score: 5.348
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 175..196
score: 7.481
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 405..427
score: 4.647
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 52..75
score: 5.948
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 381..402
score: 7.373
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 357..378
score: 7.35
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 151..172
score: 5.294
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 333..354
score: 5.44
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 18..269
e-value: 2.1E-35
score: 121.3
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 298..608
e-value: 2.1E-33
score: 114.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 24..199
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 304..479

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057296-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700Expect = 2.45e-33 / Id = 28.57Expect = 2.63e-16 / Id = 28.57SequenceSLIT3
Match NameE-valueIdentityDescription
SLIT32.447e-3328.57Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
back to top