TCONS_00057317-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057317-protein
Unique Name	TCONS_00057317-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	423

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057317-protein ID=TCONS_00057317-protein|Name=TCONS_00057317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MARLMKRSILRNLQSAIYGQKQPLSSASYFLAKSISRIEDDKSTRLLKVQ
WENGKENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDFAY
DASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDSVQRVSW
TSMEIRENTPFVDFHEIESDEKALKGHLENLLRYGLSIVRNAPLELSVLQ
KMADLMCLSIVRHTNYGPFFTVESKPSPSNLAYTGSALPMHTDLPFYDYQ
PGVQLLHCIRQSSGGESDGASLLVDGMKVVEDLKENSPEDYHLLTTTNFR
FNDEGTDFYGEFDLRFERPIIELDKNGKFVHIAYNNPVRDFINAPAENIQ
RIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNNRVLHGRMAFDATSSD
RKLHGSFLDWDDIRSTWRVLHNR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036120	XLOC_036120	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057317	TCONS_00057317	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003819	TauD/TfdA-like
IPR010376	DUF971

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003819	TauD/TfdA-like domain	PFAM	PF02668	TauD	coord: 162..405 e-value: 8.1E-36 score: 124.1
IPR010376	Domain of unknown function DUF971	PFAM	PF06155	DUF971	coord: 40..124 e-value: 6.5E-14 score: 52.2
None	No IPR available	GENE3D	3.60.130.10		coord: 150..422 e-value: 5.3E-48 score: 163.4
None	No IPR available	CDD	cd00250	CAS_like	coord: 159..411 e-value: 4.39804E-59 score: 194.539
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 109..422

Blast

[Close]

BLAST of TCONS_00057317-protein vs. Swiss-Prot (Human)
Match: BODG (Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN=BBOX1 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.398e-73
Identity = 144/399 (36.09%), Postives = 218/399 (54.64%), Query Frame = 0

Query:   31 LAKSISRIEDDKSTRLLKVQWENGKENLYPYLFLRDHCQCPECFHPFTKSRKLDTVAAVDLGITIDDFAYDASDDVVEVTWPDGHQSRFTAKWLKSRFLSRKGEQINDRTGLDSVQRVSWTSMEIRENTPFVDFHEI-ESDEKALKGHLENLLRYG---LSIVRNAPLELSVLQKMADLMCLSIVRHTNYGPFFTVESKPSPSNLAYTGSALPMHTDLPFYDYQPGVQLLHCIRQSSGGESDGASLLVDGMKVVEDLKENSPEDYHLLTTTNFRFNDEGTDFYGEFDLRFERPIIELDKNGKFVHIAYNNPVRDFI-NAPAENIQRIYEAYYKLSAMLRDKHYQFQYKMAPGDMLVFDNNRVLHGRMAFDA-TSSDRKLHGSFLDWDDIRSTWRVLHNR 423
            +A +I + E      L+++ W + +E+LYP ++LRD+C C +C+    K+RKL  V A+D+ I I    +D     V +TWPD H S F A WLK R  S++      R       +   + +++    P +DF ++   DE A K  L  L + G   L+   + P E+S L K    + L+   HT     + V+ K   +N+AYT   L  HTD P   + PGVQLLHCI+Q+  G   G S +VDG  V + LK+N+P+ + +L++T   F D G D Y +F ++ +  IIELD  G+ V I +NN  RD I + P E +Q  Y A  +   ++  K  +F +KM PGD++ FDN R+LHGR +++A T   R L G++ DWD + S  R+L  R
Sbjct:    1 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKL-LVEALDVNIGIKGLIFDRKK--VYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSELQL----PTLDFEDVLRYDEHAYKW-LSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT-----WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTG---GDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDIGVD-YCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRILRQR 382

The following BLAST results are available for this feature:

BLAST of TCONS_00057317-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057317-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BODG	1.398e-73	36.09	Gamma-butyrobetaine dioxygenase OS=Homo sapiens GN...	[more]

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TCONS_00057317-protein (polypeptide) - C. hemisphaerica