TCONS_00057510-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057510-protein
Unique NameTCONS_00057510-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057510-protein ID=TCONS_00057510-protein|Name=TCONS_00057510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
IYGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEV
NKATPRTNTSKVTPRLRNKSPIAATTATPGLLQPTGAGHLNGVIRPITMA
TQAAAYPAAWNPASLTALSTPSIPTTFQLPPSPHQLLSSAISTGTMPGTA
NPMFSSFPSPFYPTPEQYAQYYNYITGGSSVPVTPNTNQTGPIRAAPNTN
MFHRFQPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036251XLOC_036251Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057510TCONS_00057510Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..48
e-value: 3.0E-12
score: 46.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..55
score: 13.225
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 2..67
NoneNo IPR availableGENE3D3.30.70.330coord: 1..68
e-value: 3.2E-16
score: 59.0

Blast
[Close]
BLAST of TCONS_00057510-protein vs. Swiss-Prot (Human)
Match: RFOX1 (RNA binding protein fox-1 homolog 1 OS=Homo sapiens GN=RBFOX1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.343e-21
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0 
Query:    2 YGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEVNKATPRTNTSKVT 63
            +G +LD EII+NERGSKGFGFVT E S DA +A+E LHG  ++GRKIEVN AT R  T+K T
Sbjct:  140 FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKT 201
The following BLAST results are available for this feature:
BLAST of TCONS_00057510-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFOX12.343e-2164.52RNA binding protein fox-1 homolog 1 OS=Homo sapien... [more]
back to top