TCONS_00057647-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057647-protein
Unique NameTCONS_00057647-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057647-protein ID=TCONS_00057647-protein|Name=TCONS_00057647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=831bp
MEMTMDTTTTKLTALNCHGFKTNSDYINLLTTSYDIIYLSELWITESEKH
LLNSFNIDFNVYFQPAAQGESGRPFGGTALLIRKSLPKPELIMKNDFTTI
IKIQLRNYALLLIGVYLQSTSKTSNFKDIYASQLASVGGIIKQFSNSTEP
IILGDFQSCPSTHQTERTRNKNALTENLNSFILDQQLTPIDITHGTGPDF
TYHHVSLDNKSYIDHILTSHNILSKIVGTGITPPHYLNTSDHLPVTAEMT
METSNTNTYKAKQSNHIPNFMWKNKNFLNNYNSLVTNKIETIKCQDIIEE
EISTLHQTLKDCASQAYLDLKKESDFHFVNTKRWWSADLTNKRKILQKMF
NSWREDNFSRDPHNVHYNRYLLARKEFRNLAKKSKNQSTAEHYVNIDKIK
KIKPRSYWNQIRSAKSEESKLYTINNSSDIPDITKGFNSHFENLLNTPRT
DNIDNNTSNQHLDKMLGELEEHRENDFHITDSDILSAINSLNKNKTFDPY
EIKAEHFIHCTNEKVLSYIANLVNRILNAPRLPTILSTSHIVPILKSHRK
PINDPNNYRGVSLIPILTKLIEKLIILKCPQLKEHKDTQFGFTSDASTIH
AELLIRDTISFYNSKGSPVYICSLDAEKAFDSCNWYVLFEKLKNQRKLPD
VVLRFLIKLYINGEAATKYRNFITSPFRLAQGVRQGSILSPYLYNFYTED
IIDNIQRLNIGTYLPGQINTSIIVFADDIILLSPNLKHLQQMINECTLFG
IENGLKFNPSKTQFLISGQSPLCNPCITLNEKQIEQQCQLKHLGFNWKMD
RDKLSLKNHQDSRIAEMWATTASLTSCGVRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036362XLOC_036362Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057647TCONS_00057647Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR005135Endo/exonuclease/phosphatase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 552..796
e-value: 2.3E-34
score: 118.7
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 525..797
score: 18.08
NoneNo IPR availableGENE3D3.30.70.270coord: 577..796
e-value: 7.2E-27
score: 93.7
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 538..795
e-value: 1.2641E-40
score: 148.208
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 453..765
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 3..250
e-value: 6.2E-20
score: 71.1
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 12..249

Blast
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BLAST of TCONS_00057647-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.506e-17
Identity = 184/735 (25.03%), Postives = 302/735 (41.09%), Query Frame = 0 
Query:   68 QGESGRPFGGTALLIR-KSLPKPELIM--KNDFTTIIKIQLRNYALLLIGVYLQSTSKTSNFKDIYASQLASVGGIIKQFSNSTEPIILGDFQSCPSTHQTERTRNK-NALTENLNSFILDQQLTPIDIT-HGTGPDFTYHHVSLDNKSYIDHILTSHNILSKIVGTGITPPHYLNTSDHLPVTAEMTME---TSNTNTYKAKQSNHIPNFMWKNKNFLNNYNSLVTNKIET-IKCQDIIEEEISTLHQTLKDC----------ASQAYLDLKKESDFHFVNTKRWWSADLTNKRKILQKMFNSWREDNFSRDPHNVHYNRYLLARKEFRNLAKKSK-NQSTAEHYVNIDKIKK-----IKPRSYWNQIRSAKSEESKLYTINNSSDIPDITKGFNSHF--ENLLNTPRTDNIDNNTSNQHLDKMLGELEEHRENDFHITDSDILSAINSLNKNKTFDPYEIKAEHFIHCTNEKVLSYIANLVNRILNAPRLPTILSTSHIVPILKSHRKPINDPNNYRGVSLIPILTKLIEKLIILKCPQ-LKE--HKDTQFGFTSDASTIHAELLIRDTISFYN----SKGSPVYICSLDAEKAFDSCNWYVLFEKLKNQRKLPDVVLRFLIKLYINGEAATKYRNFITSPFRLAQGVRQGSILSPYLYNFYTEDIIDNI-QRLNIGTYLPGQINTSIIVFADDIILLSPN-LKHLQQMINECTLFGIENGLKFNPSKTQFLI 766
            Q    +   G A+L+  K+  KP  I   K     ++K  ++   L ++ +Y  +T      K + +           Q    +  +I+GDF + P +     TR K N  T+ LNS +    L  I  T H    ++T+        S IDHI+ S  +LSK   T I   +YL  SDH  +  E+ ++    S + T+K             N   LN+Y   V N+++  IK      E   T +Q L D           A  AY   K++ +   ++T       LT++ K L+K     +E   S+        +     KE        K N+S +  +  I+KI +     IK +   NQI + K+++  + T  + ++I    + +  H     L N    D   +  +   L++     EE    +  IT S+I++ INSL   K+  P    AE F     E+++ ++  L   I     LP     + I+ I K  R       N+R +SL+ I  K++ K++  +  Q +K+  H D Q GF      +     IR +I+       +K     I S+DAEKAFD      + + L N+  +  + L+ +  +Y    A           F L  G RQG  LSP L+N   E +   I Q   I     G+    + +FADD+I+   N +   Q ++   + F   +G K N  K+Q  +
Sbjct:   64 QANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDL---------QRDLDSHTLIMGDFNT-PLSILDRSTRQKVNKDTQELNSALHQTDLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIIT-NYL--SDHSAIKLELRIKNLTQSRSTTWKL------------NNLLLNDY--WVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAY---KRKQERSKIDT-------LTSQLKELEK-----QEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITT--DPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQ-----EEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAE-FYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRD-TTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHD-QVGFIPG---MQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTL-NKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFL 742
The following BLAST results are available for this feature:
BLAST of TCONS_00057647-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF22.506e-1725.03LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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